SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26806

Length: 2179 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene26806
GTGACCTTGGCTGTCACTCAATCAGTGTATTGCCAAAATTTGGAAAATTAAAAATTTCATAATTACAACCATATAAAATAAAGAGAACACGATCGACTTCCATCCCTACAGATTTCATTGTTCCGCAGAGGTGTCAAACAATTGGAGAGCTCGAACAATTTCAAAAGAAGGGAAAGGCAACAGTGGTGGAGACCAACGTTTTTGAAGCGCAAACAGATCGCCTAAGTTTTTCTTCTCACAGAGTATGTATGACTATATTGGTGGTATGATAAAGAAGAAGCAGCCGCAGCAGGGTTTATAGCGGCGAAGGTAAGAGATGTCGTCCATATATGTGTTGGAACCTCCCACCAAGGGGAAGGTCATCTTAAACACAACGGTAGGCCCTCTAGATATCGAGCTCTGGCCCAAAGAGACGCCCAAAGCTGTGAGGAATTTTGTGCAGTTATGCCTGGAGGGCTACTACAACAACACCATCTTCCACAGGATTATCAAGACCTTCATGGTCCAGGGCGGCGACTCAACTGGCACCGGCTCAGGTGGTGAGAGTATTTATGGAGCTCCATTTGCTGATGAAATTCATTCACGTCTCAGATTCAAGCACAGGGGTCTCGTTGCATGTGCAAATGCTGGAGATCCAAATTCAAATAACAGTCAGTTTTTCATTACTTTGGATCGATGTGATTGGCTTGATCGTAAGCACACTATTTTTGGAAAGGTTACAGGAGAGTCTATCTTTAATCTTTTGAAGCTGGGAGATATTGAAACAGATAAGGATGATCGACCTATAGATTCACCTCCAAAGATCATCTCAGTTGAGGTGTTGTGGAATCCTTTTGATGATATCATTCCAAGACAGGCTTCCAAAAAATCAGAGCCAATTTCTATTGAGGAGTTAAGCAGGGAGAACAAAAAGAAAACAGTAAAAAGGTTGAACTTGCTTTCCTTTGGAGATGAAGCAGAGGAGGAGCAGAAGGTCTTGGCAGCTGTGAAGGAGAAAATCAAAAGCAGTCATGATGTACTGAATGATCCTCGGCTTTTAAAAGAAGCGTCAGAGATGGTGGAATTGGATCCTTTAGAGTCAAAAAGGAAGAAGGAAATGCAATCATCTGTGAGAGAAGCACTCACTGTTAAGAAGAATTCTGCTTTAAATGAGGAGGATGGGAAAGCATTATCTGATACAAATGACTGGAGTGATGAGGATGAGGCAGGATTTGATGCAAGGATGAGACAGCATATTCTTAAAAAAAGGAAACATTTGGGTGATTTGAAGAATGAATTTCAAGACAGAGTAAAAGAGAAAGGAACTTTGCGGAAAAGGGAAGCTACTTCACCTGTGCGAACCAAAAGAGAGGATTCTGATGACCATGTGGGTAGGCAAGAGAAACTCACCTTGAAAAGCAAAGGTCTGGGGTCAGAAGCCAGGTCTGAGCTTACAGCAAAACTAGACATAGATGCACAACTTCTAGGTCCTGCTGAACAGCAAAGGCAGATGTACAAGCAAAAAAAGCGAAGACGTCAAGGACGTGAAGAGGAAACATTGGCAAGGTTACAAAAGTTCAAGAATTCTCTGGAACAATCAAAGATTCCAGCTTCTAACAAATCAGACAACGTTAACGATGAAGCAGATGATCAAGTGCGGTGGCTTTCACATAAGTTGGAATTTATACCTGATGCTTCAAAGAAGGATGACATGGCAAGAAAGGATGACCCAGATGCTTACATAGTTGTTGATCCCCTTCTTGAGAAAGGGAAAGAAAAGTTCAACAAAATGCAAGCAAAGTTGAAGCGCCGTGAACGTGAATGGGCAGGAAAATCCCTGGCATGATTTTTACAGCAATGTGCTTATCATATCATGTTGGGGCTGGAGTAAGATGGAAATGGACTTTAAGGTGACATGAAATTTGAGATCGAAAAATAAAATAATTGGAAAGTACTAGTGTCATATTAAGGCTTAAGATGTGCATTTTACAAAGCAGAAGTTAATATTTGTATATTGCTAACTGCTTTGGAGAGTTCTTGATAAGAACTTGCTGTTTGTAAAGAAATTCTCTCACCCTTTTACTCTCATTTCTTTATTTGAAAGTTATGTATTTGTTCCTGTTCTTTTGCAAGCTAAGTCAAGGAGCATGATGGTTTTAACTAGTTATTTCGAGCCCACATATCTAGCCTCGTATTCTCG

Ace file of the UniGene sp_v1.1_unigene26806

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	peptidyl-prolyl cis-trans isomerase, putative (EC:5.2.1.8); K12737 peptidyl-prolyl cis-trans isomerase SDCCAG10 [EC:5.2.1.8]	-	-	57%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	-	-	72%

Source	ECs	Term	Type	e value	Identity
AutoFact	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	57%

Source	InterPros	Term	Type	Identity
Blast2go	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	72%
Blast2go	Cyclophilin-like	IPR015891	-	72%
Blast2go	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	IPR020892	-	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNI6

Fln msg: your sequence is longer than subject: 503 - 163

Fln protein: MSSIYVLEPPTKGKVILNTTVGPLDIELWPKETPKAVRNFVQLCLEGYYNNTIFHRIIKTFMVQGGDSTGTGSGGESIYGAPFADEIHSRLRFKHRGLVACANAGDPNSNNSQFFITLDRCDWLDRKHTIFGKVTGESIFNLLKLGDIETDKDDRPIDSPPKIISVEVLWNPFDDIIPRQASKKSEPISIEELSRENKKKTVKRLNLLSFGDEAEEEQKVLAAVKEKIKSSHDVLNDPRLLKEASEMVELDPLESKRKKEMQSSVREALTVKKNSALNEEDGKALSDTNDWSDEDEAGFDARMRQHILKKRKHLGDLKNEFQDRVKEKGTLRKREATSPVRTKREDSDDHVGRQEKLTLKSKGLGSEARSELTAKLDIDAQLLGPAEQQRQMYKQKKRRRQGREEETLARLQKFKNSLEQSKIPASNKSDNVNDEADDQVRWLSHKLEFIPDASKKDDMARKDDPDAYIVVDPLLEKGKEKFNKMQAKLKRREREWAGKSLA*

Protein Length: 504

Fln nts: GTGACCTTGGCTGTCACTCAATCAGTGTATTGCCAAAATTTGGAAAATTAAAAATTTCATAATTACAACCATATAAAATAAAGAGAACACGATCGACTTCCATCCCTACAGATTTCATTGTTCCGCAGAGGTGTCAAACAATTGGAGAGCTCGAACAATTTCAAAAGAAGGGAAAGGCAACAGTGGTGGAGACCAACGTTTTTGAAGCGCAAACAGATCGCCTAAGTTTTTCTTCTCACAGAGTATGTATGACTATATTGGTGGTATGATAAAGAAGAAGCAGCCGCAGCAGGGTTTATAGCGGCGAAGGTAAGAG_-_ATGTCGTCCATATATGTGTTGGAACCTCCCACCAAGGGGAAGGTCATCTTAAACACAACGGTAGGCCCTCTAGATATCGAGCTCTGGCCCAAAGAGACGCCCAAAGCTGTGAGGAATTTTGTGCAGTTATGCCTGGAGGGCTACTACAACAACACCATCTTCCACAGGATTATCAAGACCTTCATGGTCCAGGGCGGCGACTCAACTGGCACCGGCTCAGGTGGTGAGAGTATTTATGGAGCTCCATTTGCTGATGAAATTCATTCACGTCTCAGATTCAAGCACAGGGGTCTCGTTGCATGTGCAAATGCTGGAGATCCAAATTCAAATAACAGTCAGTTTTTCATTACTTTGGATCGATGTGATTGGCTTGATCGTAAGCACACTATTTTTGGAAAGGTTACAGGAGAGTCTATCTTTAATCTTTTGAAGCTGGGAGATATTGAAACAGATAAGGATGATCGACCTATAGATTCACCTCCAAAGATCATCTCAGTTGAGGTGTTGTGGAATCCTTTTGATGATATCATTCCAAGACAGGCTTCCAAAAAATCAGAGCCAATTTCTATTGAGGAGTTAAGCAGGGAGAACAAAAAGAAAACAGTAAAAAGGTTGAACTTGCTTTCCTTTGGAGATGAAGCAGAGGAGGAGCAGAAGGTCTTGGCAGCTGTGAAGGAGAAAATCAAAAGCAGTCATGATGTACTGAATGATCCTCGGCTTTTAAAAGAAGCGTCAGAGATGGTGGAATTGGATCCTTTAGAGTCAAAAAGGAAGAAGGAAATGCAATCATCTGTGAGAGAAGCACTCACTGTTAAGAAGAATTCTGCTTTAAATGAGGAGGATGGGAAAGCATTATCTGATACAAATGACTGGAGTGATGAGGATGAGGCAGGATTTGATGCAAGGATGAGACAGCATATTCTTAAAAAAAGGAAACATTTGGGTGATTTGAAGAATGAATTTCAAGACAGAGTAAAAGAGAAAGGAACTTTGCGGAAAAGGGAAGCTACTTCACCTGTGCGAACCAAAAGAGAGGATTCTGATGACCATGTGGGTAGGCAAGAGAAACTCACCTTGAAAAGCAAAGGTCTGGGGTCAGAAGCCAGGTCTGAGCTTACAGCAAAACTAGACATAGATGCACAACTTCTAGGTCCTGCTGAACAGCAAAGGCAGATGTACAAGCAAAAAAAGCGAAGACGTCAAGGACGTGAAGAGGAAACATTGGCAAGGTTACAAAAGTTCAAGAATTCTCTGGAACAATCAAAGATTCCAGCTTCTAACAAATCAGACAACGTTAACGATGAAGCAGATGATCAAGTGCGGTGGCTTTCACATAAGTTGGAATTTATACCTGATGCTTCAAAGAAGGATGACATGGCAAGAAAGGATGACCCAGATGCTTACATAGTTGTTGATCCCCTTCTTGAGAAAGGGAAAGAAAAGTTCAACAAAATGCAAGCAAAGTTGAAGCGCCGTGAACGTGAATGGGCAGGAAAATCCCTGGCATGA___TTTTTACAGCAATGTGCTTATCATATCATGTTGGGGCTGGAGTAAGATGGAAATGGACTTTAAGGTGACATGAAATTTGAGATCGAAAAATAAAATAATTGGAAAGTACTAGTGTCATATTAAGGCTTAAGATGTGCATTTTACAAAGCAGAAGTTAATATTTGTATATTGCTAACTGCTTTGGAGAGTTCTTGATAAGAACTTGCTGTTTGTAAAGAAATTCTCTCACCCTTTTACTCTCATTTCTTTATTTGAAAGTTATGTATTTGTTCCTGTTCTTTTGCAAGCTAAGTCAAGGAGCATGATGGTTTTAACTAGTTATTTCGAGCCCACATATCTAGCCTCGTATTCTCG

Fln Alignment:

sp_v1.1_unigene26806___KVILNTTVGPLDIELWPKETPKAVRNFVQLCLEGYYNNTIFHRIIKTFMVQXXXXXXXXXXXESIYGAPFADEIHSRLRFKHRGLVACANAGDPNSNNSQFFITLDRCDWLDRKHTIFGKVTGESIFNLLKLGDIETDKDDRPI
A9NNI6_______________EVTLETSMGPVAVELYHKHAPKTCRNFLELSRRGYYNNVKFHRVIKDFMVQGGDPTGTGRGGESIYGPRFEDEITRDLKHTGAGILSMANAG-PNTNGSQFFISLAPTPWLDEKHTIFGRVC-KGMDVVKRLGNVQTDKNDRPI

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
107		75	25		0.996473
108		75	25		0.996473
109		75	25		0.996473
110			25	75	0.996473
1267	50			50	1.0
1268		50		50	1.0
1269			50	50	1.0
1274		50	50		1.0
1275	50	50			1.0
1276	50			50	1.0
1279	50		50		1.0
1280	50	50			1.0
1282			50	50	1.0
1287		50	50		1.0
1288	50			50	1.0
1636	72		27		1.0
1958	37	62			1.0
1960	12		87		0.992554
1970	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain