SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26780

Length: 403 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene26780
CGTCGTGACCTTGGCTGTCAATAGTGAAGGAAGACTTTTTTCTTGGGGGCAAGGTCGCTGGGGTCAAACTGGACTTGGTACTACTGATGATGAACTCATTCCAAAGCAAGTATATGCTCTTGAGGGTGCACGGGTCATTCAAGTTTCTGCGGGTGCTAGACACTCTATTGCAATAACAGAGGGAGGAATTATCTATGGTTGGGGAGATGGAGAACAAAACCAGCTTGGTAAAATTGAAAGTGAAGTGCAGCTTCTACCAATAATATTACCTTCTCTGCAGAGAAAGGGTTTGAAGATCCTGTATGTTGTCGCATCTGGGGAGCATACAATAGCAGTATTTAAGCCATCTGAAGTGGAGTGTTTGACACCCATGGACCAGAGATATTCAGAAGCAATAAGCGGA

Ace file of the UniGene sp_v1.1_unigene26780

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	uvb-resistance protein uvr8, putative	-	-	3.0e-17	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Blast2go	uvb-resistance protein	-	-	2.25939e-21	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	2.25939e-21	63%
Blast2go	chromatin binding	GO:0003682	Molecular Function	2.25939e-21	63%
Blast2go	cytosol	GO:0005829	Cellular Component	2.25939e-21	63%
Blast2go	nucleus	GO:0005634	Cellular Component	2.25939e-21	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Regulator of chromosome condensation, RCC1	IPR000408	-	2.25939e-21	63%
Blast2go	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	2.25939e-21	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNM4

Fln msg: Distance to subject end: 130 aas, your sequence is shorter than subject: 134 - 286

Fln protein: VVTLAVNSEGRLFSWGQGRWGQTGLGTTDDELIPKQVYALEGARVIQVSAGARHSIAITEGGIIYGWGDGEQNQLGKIESEVQLLPIILPSLQRKGLKILYVVASGEHTIAVFKPSEVECLTPMDQRYSEAISG

Protein Length: 135

Fln nts: CGTCGTGACCTTGGCTGTCAATAGTGAAGGAAGACTTTTTTCTTGGGGGCAAGGTCGCTGGGGTCAAACTGGACTTGGTACTACTGATGATGAACTCATTCCAAAGCAAGTATATGCTCTTGAGGGTGCACGGGTCATTCAAGTTTCTGCGGGTGCTAGACACTCTATTGCAATAACAGAGGGAGGAATTATCTATGGTTGGGGAGATGGAGAACAAAACCAGCTTGGTAAAATTGAAAGTGAAGTGCAGCTTCTACCAATAATATTACCTTCTCTGCAGAGAAAGGGTTTGAAGATCCTGTATGTTGTCGCATCTGGGGAGCATACAATAGCAGTATTTAAGCCATCTGAAGTGGAGTGTTTGACACCCATGGACCAGAGATATTCAGAAGCAATAAGCGGA

Fln Alignment:

sp_v1.1_unigene26780___TLAVNSEGRLFSWGQGRWGQTGLGTTDDELIPKQVYALEGARVIQVSAGARHSIAITEGG-IIYGWGDGEQNQLGKIESEVQLLPIILPSLQRKGLKILYVVASGEHTIAVFKPSEVE
B8LNM4_______________TVALVAGNLVCSWGRGEDGQLGHGDAEDRPMPTFVSALDGCEITSVICGADHTTAYSDSRLVVYSWGWGDFGRLGHGNSSDLFIPHAIKTLQ--GLQIKQIACGDSHCLAVTINGEVQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain