SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26766

Length: 1011 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene26766 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GCN5-related N-acetyltransferase (GNAT) family protein	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	tyramine n-feruloyltransferase 4	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GNAT domain	IPR000182	-	0.0	70%
Blast2go	Acyl-CoA N-acyltransferase	IPR016181	-	0.0	70%

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
766	75		25		1.0
778	26		73		1.0
872		23		76	1.0
893	25		75		1.0
919	12		87		0.992554
920		12		87	0.992554
925	85	14			0.993533
926		14	85		0.993533
927		14	85		0.993533
928	14		85		0.993533
998			25	75	0.996473
999	75			25	0.996473
1002		25		75	0.996473
1003	25			75	0.996473
1007	33	66			0.997452
1009			33	66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
525	539	AAAAC AAAAC AAAAC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain