SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26765

Length: 1114 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26765

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sec61 alpha subunit n=3 Tax=BEP clade RepID=Q94B06_HORVU	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	sec61 transport protein	-	-	96%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	96%

Source	InterPros	Term	Type	Identity
Blast2go	SecY protein	IPR002208	-	96%
Blast2go	Translocon Sec61/SecY, plug domain	IPR019561	-	96%
Blast2go	SecY subunit domain	IPR023201	-	96%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKZ6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 203 aas, your sequence is shorter than subject: 252 - 478

Fln protein: MPSGGFRVLHLVRPFLSILPEVQTAERKVPFREKVLYTVISLFIFLVCSQLPLYGIHSATGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNSVREDRALLNGAQKLLGVLITIGEAVAYVLSGMYGDIADLGAGNAILIIVQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKGKSSCRGKRKSGCRGERKSSS*

Protein Length: 253

Fln nts: CGTGACCTTGGCTGTCACTCAAGAGAGAGCATGACATGAACGGCGACTAAAGCCATTTGCTGTGAATAAGCAGAGCCAGGCAGTGCTTCAAAGGCGAGTTTGTCATCGACTAAGGGTTAGTAAGCACCCTTAATTCATTAGAGGGCATGGAGGTGCTAGGTTAGGCAGCTGGTATTTCGAAGGCAGAGGCGCATCTATTGCAGATCGTTAATCCCCTGCAGCGGATCAGTAGTTTTCCAGGCCCAAATTTGTAAGTTTGTTAATTTGGACTGTTCTTTGGAGAAGGAAAA_-_ATGCCAAGCGGTGGGTTTCGTGTGCTGCATCTTGTGAGACCATTTCTTTCAATCTTACCAGAAGTCCAGACGGCTGAAAGAAAAGTACCCTTTAGGGAGAAGGTTCTTTACACTGTAATCTCCCTTTTCATCTTTCTGGTATGCAGTCAGTTGCCTCTATATGGAATACATTCAGCAACCGGTGCGGATCCATTCTATTGGATGCGTGTAATTCTGGCTTCTAATCGGGGAACTGTCATGGAACTTGGTATCACCCCAATTGTTACCTCGGGCCTAGTAATGCAACTTTTGGCAGGATCCAAGATAATCGAGGTGGATAATAGTGTTCGTGAAGATCGGGCACTGCTCAATGGTGCTCAGAAGTTACTTGGAGTTCTCATCACAATAGGTGAGGCAGTTGCATATGTGCTGTCTGGAATGTATGGTGACATCGCAGACCTTGGAGCTGGCAATGCCATCCTTATTATTGTCCAGCTCTTTTTTGCTGGTATAATTGTGATATGTTTGGATGAGTTACTCCAGAAAGGGTATGGATTGGGGTCTGGCATTTCGTTGTTCATTGCTACTAATATATGTGAGAGCATAATATGGAAGGCATTTAGTCCTACAACAATTAATAGTGGACGAGGTGCAGAGTTTGAGGGAGCTGTCATTGCATTGTTCCATTTGTTGATAACCAGAACTGACAAGGGAAAGAGCAGCTGCAGAGGCAAGAGAAAGAGCGGCTGCAGAGGTGAAAGAAAGAGCAGCAGCTGAAAGAGCTGCTGCAGAAAGAGCAGCAACAGCAGTTCGTGAAAGGCCAGCATCGGATAGAGTTGGTAGTG

Fln Alignment:

sp_v1.1_unigene26765___MPSGGFRVLHLVRPFLSILPEVQTAERKVPFREKVLYTVISLFIFLVCSQLPLYGIHSATGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNSVREDRALLNGAQKLLGVLITIGEAVAYVLSGMYGDIADLGAGNAILIIVQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTD
B8LKZ6_______________MPSGGFRVLHLVRPFLSILPEVQTADRKVPFREKVLYTVISLFIFLVCSQLPLYGIHSATGADPFYWMRVILASNRGTVMELGITPLVTSGLVMQLLAGSKIIEVDNSVREDRELLNGAQKLLGVLITIGEAVAYVLSGMYGDITDLGAGNAILIIVQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
474		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain