SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26752

Length: 441 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene26752
GTGACCTTGGCTGTCACTCAGCTCTCTGGTCTGCCCATCACTACAAAAGCCGATGTTTACAGCTTCGGCATGACATTGCTTGAAATAATTTCAGGGCGGAGAAACATGGACGGGGACGCGGAATCCGAGGAGGAGTTCTTTCCCGTGTGGGCTGTAACTCGGATCAACAGTGGGAACGCCATGGAGGTTCTTGACAAAAAATTGGGGAATGATGCAGACGAGGAACAGGTGAAGAGAGCTGCCATTGTAGGGGGATGGTGCATACAGGACAATGAAGATGAAAGGCCATCGATGAGTAGTGTAGTGCAGATATTGGAAGGCATTGTCGAGGTGCCCCCTGTTCCCCCAGTCCCGCTCTCGCTACAGACCTATGCCCTCAAAGGCAAGAGTGTCGTTTTCTTCTGGGACAAGAATTCTTCTGGACACGACAACAATAACAAT

Ace file of the UniGene sp_v1.1_unigene26752

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RLK4; RLK4 (RECEPTOR-LIKE PROTEIN KINASE 4); protein kinase/ sugar binding	-	-	9.0e-26	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	s-locus lectin protein kinase family protein	-	-	2.34764e-26	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	2.34764e-26	66%
Blast2go	Protein kinase-like domain	IPR011009	-	2.34764e-26	66%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NM60

Fln msg: STOP codon was not found. Distance to subject end: 5 aas, your sequence is shorter than subject: 147 - 431

Fln protein: VTLAVTQLSGLPITTKADVYSFGMTLLEIISGRRNMDGDAESEEEFFPVWAVTRINSGNAMEVLDKKLGNDADEEQVKRAAIVGGWCIQDNEDERPSMSSVVQILEGIVEVPPVPPVPLSLQTYALKGKSVVFFWDKNSSGHDNNNN

Protein Length: 148

Fln nts: GTGACCTTGGCTGTCACTCAGCTCTCTGGTCTGCCCATCACTACAAAAGCCGATGTTTACAGCTTCGGCATGACATTGCTTGAAATAATTTCAGGGCGGAGAAACATGGACGGGGACGCGGAATCCGAGGAGGAGTTCTTTCCCGTGTGGGCTGTAACTCGGATCAACAGTGGGAACGCCATGGAGGTTCTTGACAAAAAATTGGGGAATGATGCAGACGAGGAACAGGTGAAGAGAGCTGCCATTGTAGGGGGATGGTGCATACAGGACAATGAAGATGAAAGGCCATCGATGAGTAGTGTAGTGCAGATATTGGAAGGCATTGTCGAGGTGCCCCCTGTTCCCCCAGTCCCGCTCTCGCTACAGACCTATGCCCTCAAAGGCAAGAGTGTCGTTTTCTTCTGGGACAAGAATTCTTCTGGACACGACAACAATAACAAT

Fln Alignment:

sp_v1.1_unigene26752___LAVTQLSGLPITTKADVYSFGMTLLEIISGRRNMDGDAESEEEFFPVWAVTRINSGNAMEVLDK--KLGNDADEEQVKRAAIVGGWCIQDNEDERPSMSSVVQILEGIVE
A9NM60_______________MAPEWLLGAGITSKSDVFSYGMVLLEIISGRRNVDNTRDSDNWYFPSIAINKARQDKMEEIIETGLEMKRPEDLEEAYRLIKTALWCVQSNSGLRPSMGTVVRILEGDLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain