SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26717

Length: 2059 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene26717
CAGCAGAAACTATTTCTGCTCAGGTTTTAGCAATGCATGAAGCACTAAACCAGCTTATTACCATGCAGAAGGAGTTGCAAAAACAGATGTCTGTGATGGTTGCTGTACCTGTTGCGAAAGAGGGGAAAAGAATGGAGGCTGCCCTTGGTCAACGTTTGGAGAAGGTTGTGAAAGCTCATGTGGATGCTATGTGGGCAAGATTTCAGGAAGAGAATGCAAAGCGTGAGAAAGCTGACCGGGAACGTATGCAACAGTTGACATCATTATTAAATTCAATCAACAAAGACTTACCGGCCACATTAGAACGTGTTTTGAAAAAGGAGATTGGCTCTTTAGGTCCTACTGTGGCACGCATAGTTACTCCAACTCTGGAGAAAACTATTTCAACTGCAATCAATGATTCCTTCCAGAAAGGAGTAAGTGACAAGGCATTGGCTCAGTTGGAGAAATCAGTTGTGACAAAGCTAGATTCTCTTGTATCAAGGCAAATTCAGACACAATTCCAATCCTCTGGAAAGCAAGTGCTTCAGGATACATTGAGGTCTAGTTTTGAGAATTCAATTATCCCAGCCTTTGAGCGATCCTGTAAGGCAATGTTTGACCAAGTTGATGCTGCATTTCAAAAAGGAATGGCAGAACACACAACGGCTGCCCAGCAGCAATTTGCATCTACACATACAGTGCTTGCATCAACACTTCAGGATGCTGTTGCATCTGCGTCGTCTCTTGCACAATCACTTAAAGGTGAATTAGCTGACGGACAGCGGAGATTATTAGCTTTAGCAGAGGGTGCAGGAGCAAGTTCAGCACGTTTACCTGCTTTCAGTACCAAACAAGGCAACAGTGGTCTGGGTGGCTTGCCTGATAAGAAGGCAATTTCACTTAAACACCTGGAGGAGTCCCTTGATCCTACAAAAGAACTTTCCAGATTGATGTCTGAGCGCAAATTTGAGGAGGCTTTTCACAAAGCACTTCAAATGAGTGACGTTTCAATAGTTTCATGGTTATGTACCCAGGCTGATCCACAATCTCTGTTTTCAATGGTTCCACTTCCGCTGAGCCAAGGGGTGCTGCTTTCGCTTGTTCAACAACTCAGCTGTGATCTTGGAAAAGACACTTCTAGAAAACTGGTTTGGATAAGAGAGGCTGCTCTTGCATTAAATCCAAATGATCCAATACTTGCACACCATATGCGGCCAATTCTCGGAGATCTTTATCAGAACTTGCATGGACAAATGCTTATCACTAGTTCAGGAGGGGAAGCAAGTTCCATTCGATTAGTGCTCCATTTGGTGAATTCTATATTAACAGCATGTAAATGACTAGCAGCTGAATTTCCTGTATTATGAATATATGTGCTGTAGACAGATAACGAGGCAGATTTCAAGACTTGGCATCGTGTATAGTATGAGGGATGGGAAGCTCAGATCTATGTTGGGGTGTATTTACTTGCAGTCACGTCTGATCCATAGGTTTTACTCGGAGTTAGTGAACATTTTTAAGGACAGTCAATTTTTTTTAATTGATATCATTGGTTGGTGCTTCTTGCATTCATCTGGAGCTTCCCTCTCTACTGGAAATTCCAATAGATGCAAGCATCGTTTAAAATTTTAGGGTGTGTGTTGTAGTCTGCCAAAAGGGCAACTCAATCCTTTTTACTACACCTTATTGGGAGAATGGTATTACTGGTCTGAGCTTCGTAAGAAGTAATTGCTGTAGCTTTGGAATGTAACTTAGTTTGCCCAATGCCAGTCCCTTCTTTGGTATAGTTCTAGTTTTAGCAATTTTTTTAGTAGGATCAATTCACCTTAAGGTTAATGTGTAAGTTTTCCAGGAACAACTTTGATTGGAAGCAAGCTCTTTCTTTAGGTGGCATAACTTTGATAACATGAGAAGTGGTGGTGGTGCCAAAAATTAAGTCAGCATTCTGCTATTTTCTCATAGTTACATTTATTGCCCGATTTGTTGGATTTAGATGTAAAGTGACGGTTTACTTTTGTTTAGTGTTTCTACTCCATTCACAAGGTCTTCCCGTTTATGGGTTCTTCATTCCTTACAT

Ace file of the UniGene sp_v1.1_unigene26717 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	60%
Blast2go	protein	-	-	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9SVK7

Fln msg: your sequence is shorter than subject: 440 - 1161

Fln protein: AETISAQVLAMHEALNQLITMQKELQKQMSVMVAVPVAKEGKRMEAALGQRLEKVVKAHVDAMWARFQEENAKREKADRERMQQLTSLLNSINKDLPATLERVLKKEIGSLGPTVARIVTPTLEKTISTAINDSFQKGVSDKALAQLEKSVVTKLDSLVSRQIQTQFQSSGKQVLQDTLRSSFENSIIPAFERSCKAMFDQVDAAFQKGMAEHTTAAQQQFASTHTVLASTLQDAVASASSLAQSLKGELADGQRRLLALAEGAGASSARLPAFSTKQGNSGLGGLPDKKAISLKHLEESLDPTKELSRLMSERKFEEAFHKALQMSDVSIVSWLCTQADPQSLFSMVPLPLSQGVLLSLVQQLSCDLGKDTSRKLVWIREAALALNPNDPILAHHMRPILGDLYQNLHGQMLITSSGGEASSIRLVLHLVNSILTACK*

Protein Length: 441

Fln nts: CAGCAGAAACTATTTCTGCTCAGGTTTTAGCAATGCATGAAGCACTAAACCAGCTTATTACCATGCAGAAGGAGTTGCAAAAACAGATGTCTGTGATGGTTGCTGTACCTGTTGCGAAAGAGGGGAAAAGAATGGAGGCTGCCCTTGGTCAACGTTTGGAGAAGGTTGTGAAAGCTCATGTGGATGCTATGTGGGCAAGATTTCAGGAAGAGAATGCAAAGCGTGAGAAAGCTGACCGGGAACGTATGCAACAGTTGACATCATTATTAAATTCAATCAACAAAGACTTACCGGCCACATTAGAACGTGTTTTGAAAAAGGAGATTGGCTCTTTAGGTCCTACTGTGGCACGCATAGTTACTCCAACTCTGGAGAAAACTATTTCAACTGCAATCAATGATTCCTTCCAGAAAGGAGTAAGTGACAAGGCATTGGCTCAGTTGGAGAAATCAGTTGTGACAAAGCTAGATTCTCTTGTATCAAGGCAAATTCAGACACAATTCCAATCCTCTGGAAAGCAAGTGCTTCAGGATACATTGAGGTCTAGTTTTGAGAATTCAATTATCCCAGCCTTTGAGCGATCCTGTAAGGCAATGTTTGACCAAGTTGATGCTGCATTTCAAAAAGGAATGGCAGAACACACAACGGCTGCCCAGCAGCAATTTGCATCTACACATACAGTGCTTGCATCAACACTTCAGGATGCTGTTGCATCTGCGTCGTCTCTTGCACAATCACTTAAAGGTGAATTAGCTGACGGACAGCGGAGATTATTAGCTTTAGCAGAGGGTGCAGGAGCAAGTTCAGCACGTTTACCTGCTTTCAGTACCAAACAAGGCAACAGTGGTCTGGGTGGCTTGCCTGATAAGAAGGCAATTTCACTTAAACACCTGGAGGAGTCCCTTGATCCTACAAAAGAACTTTCCAGATTGATGTCTGAGCGCAAATTTGAGGAGGCTTTTCACAAAGCACTTCAAATGAGTGACGTTTCAATAGTTTCATGGTTATGTACCCAGGCTGATCCACAATCTCTGTTTTCAATGGTTCCACTTCCGCTGAGCCAAGGGGTGCTGCTTTCGCTTGTTCAACAACTCAGCTGTGATCTTGGAAAAGACACTTCTAGAAAACTGGTTTGGATAAGAGAGGCTGCTCTTGCATTAAATCCAAATGATCCAATACTTGCACACCATATGCGGCCAATTCTCGGAGATCTTTATCAGAACTTGCATGGACAAATGCTTATCACTAGTTCAGGAGGGGAAGCAAGTTCCATTCGATTAGTGCTCCATTTGGTGAATTCTATATTAACAGCATGTAAATGA___CTAGCAGCTGAATTTCCTGTATTATGAATATATGTGCTGTAGACAGATAACGAGGCAGATTTCAAGACTTGGCATCGTGTATAGTATGAGGGATGGGAAGCTCAGATCTATGTTGGGGTGTATTTACTTGCAGTCACGTCTGATCCATAGGTTTTACTCGGAGTTAGTGAACATTTTTAAGGACAGTCAATTTTTTTTAATTGATATCATTGGTTGGTGCTTCTTGCATTCATCTGGAGCTTCCCTCTCTACTGGAAATTCCAATAGATGCAAGCATCGTTTAAAATTTTAGGGTGTGTGTTGTAGTCTGCCAAAAGGGCAACTCAATCCTTTTTACTACACCTTATTGGGAGAATGGTATTACTGGTCTGAGCTTCGTAAGAAGTAATTGCTGTAGCTTTGGAATGTAACTTAGTTTGCCCAATGCCAGTCCCTTCTTTGGTATAGTTCTAGTTTTAGCAATTTTTTTAGTAGGATCAATTCACCTTAAGGTTAATGTGTAAGTTTTCCAGGAACAACTTTGATTGGAAGCAAGCTCTTTCTTTAGGTGGCATAACTTTGATAACATGAGAAGTGGTGGTGGTGCCAAAAATTAAGTCAGCATTCTGCTATTTTCTCATAGTTACATTTATTGCCCGATTTGTTGGATTTAGATGTAAAGTGACGGTTTACTTTTGTTTAGTGTTTCTACTCCATTCACAAGGTCTTCCCGTTTATGGGTTCTTCATTCCTTACAT

Fln Alignment:

sp_v1.1_unigene26717___AQVLAMHEALNQLITMQKELQKQMSVMVAVPVAKEGKRMEAALGQRLEKVVKAHVDAMWARFQEENAKREKADRERMQQLTSLL-NSINKDLPATLERVLKKEIGSLGPTVARIVTPTLEKTISTAINDSFQKGVSDKALAQLEKSVVTKLDSLVSRQIQTQFQSSGKQVLQDTLRSSFENSIIPAFERSCKAMFDQVDAAFQKGMAEHTTAAQQQFASTHTVLASTXXXXXXXXXXXXXXLKGELADGQXXXXXXXXXXXXXXXXLPAFSTKQGNSGLGGLPDKKAISLKHLEESLDPTKELSRLMSERKFEEAFHKALQMSDVSIVSWLCTQADPQSLFSMXXXXXXXXXXXXXXXXXSCDLGKDTSRKLVWIREAALALNPNDPILAHHMRPILGDLYQNLHGQMLITSSGGEASSIRLVLHLVNSILTACK
A9SVK7_______________AQVASMQESLNQLVSMQKEIQKQMTVMVAVPVAKEGKRMEGALGQRMEKVLKAHVDAMWARLAEENARREKQERERVQQVTTMLTNFVSKDMPVALERGVKKEFAAIGPVVAQAVLPPLHKAVSTTVAESFQ-GFTEKMLPQLEKSVGAKLEGTVTRQIQTQFQTIGRQVLQEALRSCFESTVLPAFERTCRTMLDHVESSFQHGMSEYTQHAQEQLLSSHSDLASTLKDTVASATVLADSLKGELAEGQ----KKLMALAESASANAARALPANNQINGGLPDK---------ESLDPTIELSRLLKENKLEEAFNKALSLSDVAVVSWLCMQLDEDHLFRKVPLPLSQGVLLSLVQQLGCDLGKDTDRKLSWIREAALALNPEDPLLAPHMRPFLQQLYQSLHRQLSLSSVPGEQVNLRLVMHVVHSLLTSCK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1132	10			90	0.90298
1144		14		85	0.993533
1145		14		85	0.993533
1146	14			85	0.993533
1150	80	20			0.995493
1151		20	80		0.995493
1152		20	80		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
153	164	CAC CAC CAC CAC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain