SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26702

Length: 1288 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26702

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	haloacid dehalogenase-like hydrolase family protein	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	haloacid dehalogenase-like hydrolase family protein	-	-	87%

Source	InterPros	Term	Type	Identity
Blast2go	Haloacid dehalogenase/epoxide hydrolase	IPR005833	-	87%
Blast2go	Haloacid dehalogenase-like hydrolase	IPR005834	-	87%
Blast2go	HAD-superfamily hydrolase, subfamily IA, variant 1	IPR006439	-	87%
Blast2go	HAD-superfamily hydrolase, subfamily IA, REG-2-like	IPR011949	-	87%
Blast2go	HAD-like domain	IPR023214	-	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRW6

Fln msg:

Fln protein: MISVFTRRGGRFVEEAAAALGVSVRAAAIGDGGQQVSASAYGSCSTPQSLQQQRIDMSRRRGIEGGRRRYLSSIASASTTETKEMCGGGEQEWYDNYRRSLYGGLTHKALLVDAVGTLVLPSQPAAQIYRNIGLKYGVSYSEAEILSRYRWAYQQPWPNTRLRFMDDARPFWQYVVQTATGCSDSRYFEELYEYYTTDQAWHICDPEAGKVFEALRRAGVKLAVVSNFDTRLRPLLQALKCEQWFDALAVSAEVEAEKPNPTIFWKACEFLGVEPEDAVHVGDDRRNDIWGARDAGCDAWLWGADVHSFKEVAQRIGVDV*

Protein Length: 322

Fln nts: AGAGAATGTGGATGATATATAATCAGCCTGGGAGCTAGTCACAGAAAATTTGTTTTAGAAAAGAGGAAAG_-_ATGATTTCGGTTTTTACCAGAAGAGGAGGAAGATTTGTTGAAGAAGCTGCAGCAGCCCTTGGTGTGAGTGTCAGGGCTGCTGCAATCGGAGATGGAGGCCAGCAGGTCTCTGCTTCTGCATATGGAAGCTGCTCAACTCCACAGTCACTGCAACAACAGAGGATTGATATGTCAAGAAGAAGAGGAATTGAAGGTGGCAGAAGAAGATATTTGTCATCGATAGCATCTGCATCAACTACAGAGACAAAGGAGATGTGTGGTGGTGGAGAACAGGAATGGTACGACAACTATAGAAGATCATTGTATGGAGGGCTTACTCACAAAGCTCTCTTGGTGGACGCTGTTGGCACGCTGGTTCTCCCATCCCAGCCAGCTGCTCAGATATACAGGAATATTGGTCTCAAGTATGGTGTCAGTTACTCAGAGGCCGAAATTCTTAGTCGGTACCGTTGGGCTTATCAGCAACCTTGGCCTAACACTCGCTTAAGATTCATGGACGACGCCAGACCTTTCTGGCAGTATGTTGTACAGACTGCTACAGGCTGCTCCGATTCCCGATATTTTGAGGAGCTTTATGAGTATTATACTACGGATCAGGCTTGGCATATTTGCGACCCAGAAGCAGGGAAAGTATTTGAAGCACTGAGGAGAGCTGGAGTAAAGTTAGCTGTAGTTTCAAATTTTGATACTCGCCTAAGACCTTTATTGCAGGCTCTTAAGTGTGAACAATGGTTTGATGCATTGGCTGTATCAGCTGAGGTGGAAGCAGAGAAGCCCAACCCAACGATATTTTGGAAGGCATGTGAATTTCTAGGAGTAGAACCAGAGGATGCAGTGCATGTAGGAGATGATCGGCGCAATGACATTTGGGGTGCCAGAGATGCGGGTTGTGATGCTTGGCTTTGGGGTGCTGATGTACACTCTTTTAAAGAGGTTGCCCAAAGGATTGGTGTGGATGTCTGA___AAGTAATGAGACTGACATGGCTATGCATTACAACTCGTCATCAATCTGTATCATATTGGGTTCAGCAAGAATGACTGCAATATTTCAAGCTCCTTGGACAGATGTTTGGAAAATTTTCATGCTATGTAAATTAAGTCAACTACAGGAACTGTTATTTTCAGTTAACTGGACAGTTCAACGTACTTTCTTCTTGTATATATGTATATTGCAATGAAACAAAAAATAAAATGAAGGGTGATTTTTGCCCAAACACTA

Fln Alignment:

sp_v1.1_unigene26702___MISVFTRRGGRFVEEXXXXXXXXXXXXXIGDGGQQVSASAYGSCSTPQSLQQQRIDMSXXXXXXXXXXXY-LSSIASASTTETKEMCGGGEQEWYDNYRRSLYGGLTHKALLVDAVGTLVLPSQPAAQIYRNIGLKYGVSYSEAEILSRYRWAYQQPWPNTRLRFMDDARPFWQYVVQTATGCSDSRYFEELYEYYTTDQAWHICDPEAGKVFEALRRAGVKLAVVSNFDTRLRPLLQALKCEQWFDALAVSAEVEAEKPNPTIFWKACEFLGVEPEDAVHVGDDRRNDIWGARDAGCDAWLWGADVHSFKEVAQRIGVDV
A9NRW6_______________MISVFTRRGGRFIEEAAAALSVSAMAAAIGGGGPQVSASASECCSTPQALQQQKIDISRRRRGIEGGRRRCLSSIASTSTTETKEMSGGGEQEWYDKYRRSLYGGLTHKALLVDAVGTLVLPSQPAAQIYRNIGLKYGVCYSEDEILSRYRWAYQQPWPNTRLRFMDDARPFWQFVVQNATGCSDSRYFEELYEYYTTDQAWHICDPEAGKVFEALRRAGIKLAVVSNFDTRLRPLLQALKCEHWFDALAVSAEVEAEKPNPTIFWKACEFLGVEPEDAVHVGDDRRNDIWGARDAGCDAWLWGADVHSFKEVAQRIGVVV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
904	96		3		0.993591
925			78	22	1.0
1157	68		31		1.0
1190		27		72	1.0
1250	12	87			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain