SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26701

Length: 956 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene26701 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	band 7 family protein	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	hypersensitive-induced response protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	88%
Blast2go	vacuole	GO:0005773	Cellular Component	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Band 7 protein	IPR001107	-	0.0	88%
Blast2go	Stomatin	IPR001972	-	0.0	88%

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
457	90		10		0.90298
470	50	50			1.0
619		55	44		1.0
620		55	44		1.0
646	88		11		0.923564
651	55		44		1.0
752		12		87	0.992554
753		12	87		0.992554
754		12	87		0.992554
786		14	85		0.993533
787	85	14			0.993533
788	85	14			0.993533
789	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain