SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26700

Length: 2357 nt

UniGene Fasta

>sp_v1.1_unigene26700
ATTGGGGGCTCTCTGAAAGCGCTCTGTTTCTCAAAAGAACCGCATATGCGTCCAGCTACGAATGCATTTCCTGCCCTCGTATACGCTTCGAGATTGAGTCCAGCAATAGCAGAAGGGTTTAGAAGGAAAGATGGAGACCATGGAGATGCCTGTGCCAGTGCCTCCACATCGCCTGGGCAACGATACCCAGCAACTCAACATCGATTTTTCCAATGTTGACTTGGATTCAATACAGCTTCCTCCCGGTGAAGATTTCGGCATCAAAAGTGAGGATGAGGAGGAAGACGAAGATTCACTAGAGTTCGAGACTGGGTTCGGCAACATTGTAGTTGTAGACAATCTCCCGGTAGTCCCTCCAGAGAAGTTTGAGAAACTCGAAGGTGTTGTTCGCAAGATATTTGGGCAGATTGGTACAATCAGGGAGAGGGGGCTCTGGATGCCACTCCACCCCGAGACCCAGAAGACTAAAGGATATTGTTTTATAGAGTACAACACCCCTCAGGAAGCACAGACAGCAAAAGATCAAACAAATGGATATAAGCTGGATAAATCCCATATATTTGCTGTTAACATGTTTGATGACTTTGATAAATATATGAAAGTATCAAATGAGTGGATTCCTCCAGAAACAAAGGCCTATACACCTGTGGAAAATTTACAACAATGGCTAACAGACGACAAAGGACGTGATCAATTTGTTGTTCGTGCTAACACTGACACTGAAGTTTATTGGAATGATCCTAGACAACTCAGACCAGAACTAGTCTACCGACGTGGATACTGGACTGAAAGCTTTGTCCAGTGGTCATCTCTTGGAACTTACCTCGCAACGGTGCACAGGCAGGGAGCAGCTATTTGGGGAGGTGCTACAACCTTTAACCGTCTGATGCGATTTGCACATCCACAGGTAAAATTGATAGATTTCTCTCCTGGTGAAAAATTCTTGGTTACTTACAGCAGTCACGAGCCAAGTAATCCTCGAGACACACAGAGGGTTACCCTCAACATTTTTGACGTGAGGACTGGTAAAGTATTGAGAGAGTTTAAAGGAAGTGCTGATGATTTTGCAACTGGCGGAACTGGTGGTGTTGCTGGTGTGTCTTGGCCTGTATTCAGATGGGCTGGTGGCAGAGATGACAAATACTTTGCCCGCATTGGGAAAAATGCCATCAGTGTTTATGAAACAGATACCATGAGTCTCCTAGATAAGAAATCCCTCAAAGTTGACAATGTAATGGATTTCTGTTGGTCACCAACAGATCCAATACTAGCCTTGTTTGTTCCAGAAGGAGGTGGTGGTAACCAACCTGCAAAAGTGAGTCTTGTACAAATCCCTGGAAGGGAAGAACTGCGGCAGAAAAATCTGTTCAGTGTAAGTGATTGCAAAATGTATTGGCAAAGCAATGGGGACTACTTAGCAGTCAAAGTTGACCGCTATACAAAGACGAAGAAAAGTACATACACAGGTTTTGAACTTTTCCGAATAAAGGAAAGAGATATCCCCATAGAGGTTCTGGAATTAGAGAACAAGAATGACAAGATCATTGCATTCGCTTGGGAGCCCAAAGGCCACAGGTTTGCTATTATCCACGGGGATGGACCCAGGCCAGATATTAGTTTCTATTCAATGAGGAGCCCTAATCATGTGGGCCGGGTTTTCAAGCTGGCTACCATCAAAGGAAAACAAGCAAACTCCCTTTACTGGTCCCCCATTGGACGGTTTATTATTCTTGCAGGTCTAAAAGCTTTAAATGGTCAGCTTGAATTTTACAATGTCGATGAATTGGAGACAATGGCAACTGGTGAACACTTCATGGCAACTGATATTGAGTGGGATCCTACTGGAAGATATGCTGCAACAGCAGTTACATCTGTGCATGAAATGGAAAATGGGTTTAACATATGGTCTTTCAATGGAAAGCTATTGTACCACGTTTCAAGAGATCATTTCTACCAGCTATTATGGCGACCGAGGCCACCCTCTCTTCTAAGCCCAGAGAAAGAGGAGGAGATCGCTAAGAATTTGAGGAAGTATAGTAAGAAGTATGAGGCTGAAGACCAGGATGTTTCGTTATTGTTGAGTGAGCAAGACAGGGAGAAACGGAAGAAATTACAAGAGGATTGGCAGGTCTGGGTCAATGAATGGAAACGTTTTCACGAGGAAGAGAAATTATTTAGACAGGAGCTACGTGATGGAGAGCCTAGTGATGAAGAAGAGGAATATGAAGCAGAAGAAGTTGAAGTTGAAGAGATCGTAGACGTTACTGAAGAGATTGCTTCATTTGGTTTTGAGCAGATGGACTGAGTGATTGTATAGCATGAATCTATTTGTGCCTTCATGCAGGGAGATAGCTTGG

Ace file of the UniGene sp_v1.1_unigene26700

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic translation initiation factor 3 subunit, putative; K03253 translation initiation factor eIF-3 subunit 9	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	eukaryotic translation initiation factor 3	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	nucleus	GO:0005634	Cellular Component	87%
Blast2go	cytosol	GO:0005829	Cellular Component	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWV8

Fln msg:

Fln protein: METMEMPVPVPPHRLGNDTQQLNIDFSNVDLDSIQLPPGEDFGIKSEDEEEDEDSLEFETGFGNIVVVDNLPVVPPEKFEKLEGVVRKIFGQIGTIRERGLWMPLHPETQKTKGYCFIEYNTPQEAQTAKDQTNGYKLDKSHIFAVNMFDDFDKYMKVSNEWIPPETKAYTPVENLQQWLTDDKGRDQFVVRANTDTEVYWNDPRQLRPELVYRRGYWTESFVQWSSLGTYLATVHRQGAAIWGGATTFNRLMRFAHPQVKLIDFSPGEKFLVTYSSHEPSNPRDTQRVTLNIFDVRTGKVLREFKGSADDFATGGTGGVAGVSWPVFRWAGGRDDKYFARIGKNAISVYETDTMSLLDKKSLKVDNVMDFCWSPTDPILALFVPEGGGGNQPAKVSLVQIPGREELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDGPRPDISFYSMRSPNHVGRVFKLATIKGKQANSLYWSPIGRFIILAGLKALNGQLEFYNVDELETMATGEHFMATDIEWDPTGRYAATAVTSVHEMENGFNIWSFNGKLLYHVSRDHFYQLLWRPRPPSLLSPEKEEEIAKNLRKYSKKYEAEDQDVSLLLSEQDREKRKKLQEDWQVWVNEWKRFHEEEKLFRQELRDGEPSDEEEEYEAEEVEVEEIVDVTEEIASFGFEQMD*

Protein Length: 726

Fln nts: ATTGGGGGCTCTCTGAAAGCGCTCTGTTTCTCAAAAGAACCGCATATGCGTCCAGCTACGAATGCATTTCCTGCCCTCGTATACGCTTCGAGATTGAGTCCAGCAATAGCAGAAGGGTTTAGAAGGAAAG_-_ATGGAGACCATGGAGATGCCTGTGCCAGTGCCTCCACATCGCCTGGGCAACGATACCCAGCAACTCAACATCGATTTTTCCAATGTTGACTTGGATTCAATACAGCTTCCTCCCGGTGAAGATTTCGGCATCAAAAGTGAGGATGAGGAGGAAGACGAAGATTCACTAGAGTTCGAGACTGGGTTCGGCAACATTGTAGTTGTAGACAATCTCCCGGTAGTCCCTCCAGAGAAGTTTGAGAAACTCGAAGGTGTTGTTCGCAAGATATTTGGGCAGATTGGTACAATCAGGGAGAGGGGGCTCTGGATGCCACTCCACCCCGAGACCCAGAAGACTAAAGGATATTGTTTTATAGAGTACAACACCCCTCAGGAAGCACAGACAGCAAAAGATCAAACAAATGGATATAAGCTGGATAAATCCCATATATTTGCTGTTAACATGTTTGATGACTTTGATAAATATATGAAAGTATCAAATGAGTGGATTCCTCCAGAAACAAAGGCCTATACACCTGTGGAAAATTTACAACAATGGCTAACAGACGACAAAGGACGTGATCAATTTGTTGTTCGTGCTAACACTGACACTGAAGTTTATTGGAATGATCCTAGACAACTCAGACCAGAACTAGTCTACCGACGTGGATACTGGACTGAAAGCTTTGTCCAGTGGTCATCTCTTGGAACTTACCTCGCAACGGTGCACAGGCAGGGAGCAGCTATTTGGGGAGGTGCTACAACCTTTAACCGTCTGATGCGATTTGCACATCCACAGGTAAAATTGATAGATTTCTCTCCTGGTGAAAAATTCTTGGTTACTTACAGCAGTCACGAGCCAAGTAATCCTCGAGACACACAGAGGGTTACCCTCAACATTTTTGACGTGAGGACTGGTAAAGTATTGAGAGAGTTTAAAGGAAGTGCTGATGATTTTGCAACTGGCGGAACTGGTGGTGTTGCTGGTGTGTCTTGGCCTGTATTCAGATGGGCTGGTGGCAGAGATGACAAATACTTTGCCCGCATTGGGAAAAATGCCATCAGTGTTTATGAAACAGATACCATGAGTCTCCTAGATAAGAAATCCCTCAAAGTTGACAATGTAATGGATTTCTGTTGGTCACCAACAGATCCAATACTAGCCTTGTTTGTTCCAGAAGGAGGTGGTGGTAACCAACCTGCAAAAGTGAGTCTTGTACAAATCCCTGGAAGGGAAGAACTGCGGCAGAAAAATCTGTTCAGTGTAAGTGATTGCAAAATGTATTGGCAAAGCAATGGGGACTACTTAGCAGTCAAAGTTGACCGCTATACAAAGACGAAGAAAAGTACATACACAGGTTTTGAACTTTTCCGAATAAAGGAAAGAGATATCCCCATAGAGGTTCTGGAATTAGAGAACAAGAATGACAAGATCATTGCATTCGCTTGGGAGCCCAAAGGCCACAGGTTTGCTATTATCCACGGGGATGGACCCAGGCCAGATATTAGTTTCTATTCAATGAGGAGCCCTAATCATGTGGGCCGGGTTTTCAAGCTGGCTACCATCAAAGGAAAACAAGCAAACTCCCTTTACTGGTCCCCCATTGGACGGTTTATTATTCTTGCAGGTCTAAAAGCTTTAAATGGTCAGCTTGAATTTTACAATGTCGATGAATTGGAGACAATGGCAACTGGTGAACACTTCATGGCAACTGATATTGAGTGGGATCCTACTGGAAGATATGCTGCAACAGCAGTTACATCTGTGCATGAAATGGAAAATGGGTTTAACATATGGTCTTTCAATGGAAAGCTATTGTACCACGTTTCAAGAGATCATTTCTACCAGCTATTATGGCGACCGAGGCCACCCTCTCTTCTAAGCCCAGAGAAAGAGGAGGAGATCGCTAAGAATTTGAGGAAGTATAGTAAGAAGTATGAGGCTGAAGACCAGGATGTTTCGTTATTGTTGAGTGAGCAAGACAGGGAGAAACGGAAGAAATTACAAGAGGATTGGCAGGTCTGGGTCAATGAATGGAAACGTTTTCACGAGGAAGAGAAATTATTTAGACAGGAGCTACGTGATGGAGAGCCTAGTGATGAAGAAGAGGAATATGAAGCAGAAGAAGTTGAAGTTGAAGAGATCGTAGACGTTACTGAAGAGATTGCTTCATTTGGTTTTGAGCAGATGGACTGA___GTGATTGTATAGCATGAATCTATTTGTGCCTTCATGCAGGGAGATAGCTTGG

Fln Alignment:

sp_v1.1_unigene26700___METMEMXXXXXXHRLGNDTQQLNIDFSNVDLDSIQLPPGEDFGIKSXXXXXXXXXXXXXTGFGNIVVVDNLPVVPPEKFEKLEGVVRKIFGQIGTIRERGLWMPLHPETQKTKGYCFIEYNTPQEAQTAKDQTNGYKLDKSHIFAVNMFDDFDKYMKVSNEWIPPETKAYTPVENLQQWLTDDKGRDQFVVRANTDTEVYWNDPRQLRPELVYRRGYWTESFVQWSSLGTYLATVHRQGAAIWGGATTFNRLMRFAHPQVKLIDFSPGEKFLVTYSSHEPSNPRDTQRVTLNIFDVRTGKVLREFKGSADDFXXXXXXXXXXXSWPVFRWAGGRDDKYFARIGKNAISVYETDTMSLLDKKSLKVDNVMDFCWSPTDPILALFVPEGGGGNQPAKVSLVQIPGREELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDGPRPDISFYSMRSPNHVGRVFKLATIKGKQANSLYWSPIGRFIILAGLKALNGQLEFYNVDELETMATGEHFMATDIEWDPTGRYAATAVTSVHEMENGFNIWSFNGKLLYHVSRDHFYQXXXXXXXXXXXXXXXXXXIAKNLRKYSKKYEAEDQDVSLLLSEQDREKRKKLQEDWQVWVNEWKRFHEEEKLFRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIASFGFEQMD
A9NWV8_______________METIEMPLPVPVHRLGNDIQQLNIDFSNVDLDSIQLPPGEDFGIKSEDEEEEEDSLEFETGFGNIVVVDNLPVVPPEKFEKLEGVVRKIFGQIGTIRERGLWMPIHPETQKTQGYCFIEYNTPQEAQTAKDQTNGYKLDKSHVFAVNMFDDFDKYMKVPNEWIPPETKAYTPGENLQQWLTDEKGRDQYVIRSNTDTEVYWNDPRQLKPELVYRRGYWTESFVQWSSLGTYLATVHRQGAAIWGGGTTFNRLMRFAHPQVKLIDFSPGENFLVTYSSHEPSNPRDTQRVTLNIFEVRTGKVLREFKGSADDFATGGTGGVAGVSWPVFRWAGGRDDKYFARIGKNAISVYETDTMTLLDKKSLKVDNVMDFSWSPTDPILALFVPEGGGGNQPAKVSLVQIPGREELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDGPRPDVSFYSMRSPNNVGRVSKLATIKGKQANSLYWSPIGRFIILAGLKALNGQLEFFNVDELETMATGEHFMATDIEWDPTGRYAATSVTVVHEMENGFNIWSFNGKLLYRIPRDHFYQLLWRPRPPSLLSPEKEEEISKNLRKYSKKYEAEDQDVSLLLSEQDREKRKRLQEDWQGWVNEWKRLHEEEKLFRQDLRDGEPSDEEEEYEAEEVEVEELIDVTEEIASFGFEQLD

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
247		33		66	0.997452
256		66		33	0.997452
277	33		66		0.997452
286	33	66			0.997452
319		66		33	0.997452
814		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain