SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26697

Length: 1448 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene26697 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calreticulin n=2 Tax=Pinaceae RepID=Q9FYV2_PINTA	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	calreticulin 2	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	90%
Blast2go	plant-type hypersensitive response	GO:0009626	Biological Process	90%
Blast2go	response to salt stress	GO:0009651	Biological Process	90%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	90%
Blast2go	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	90%
Blast2go	protein binding	GO:0005515	Molecular Function	90%
Blast2go	mitochondrion	GO:0005739	Cellular Component	90%
Blast2go	endosome	GO:0005768	Cellular Component	90%
Blast2go	vacuole	GO:0005773	Cellular Component	90%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Blast2go	Calreticulin/calnexin	IPR001580	-	90%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	90%
Blast2go	Calreticulin/calnexin, P	IPR009033	-	90%
Blast2go	Calreticulin	IPR009169	-	90%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	90%
Blast2go	Calreticulin/calnexin, conserved site	IPR018124	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP55

Fln msg:

Fln protein: MGIEPKPLTMASGGLVKLALLLICCASISSAHVYLEERFNDGWENRWVISDWKKDEGASGDWLHTAGKWNGDPEDKGIQTHPDARFFAISAEFPEFNNKDKTLVLQFSVKHEQKLDCGGGYVKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILGHGGKNHPIKKDVSCETDQLTHVYTFILRPDATYSILIDNKEKDSGSLYTEWDILPPKQIKDPDAKKPEDWEDKEYIPDPEDKKPEGYDDIPQEIPDSDATKPEDWDDEEDGEWKAPTIPNPEYKGPWKPKKIKNPKYKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPEYAKKLAEETWGKHKDAEKKMRRRNLRILMMRTYLTRLKSQKRTRIMTSMTSCR*

Protein Length: 405

Fln nts: _-_ATGGGGATCGAACCCAAACCCTTGACAATGGCTTCTGGAGGATTGGTCAAGCTGGCCCTCCTGCTCATATGCTGTGCTTCGATATCCTCCGCTCATGTTTATCTCGAAGAGCGATTCAACGATGGATGGGAAAATCGTTGGGTGATATCCGATTGGAAGAAGGATGAGGGTGCATCAGGGGACTGGCTTCACACTGCTGGAAAATGGAATGGGGACCCCGAAGACAAAGGGATTCAAACTCATCCAGATGCACGTTTCTTCGCCATTTCGGCTGAGTTTCCAGAGTTTAACAACAAGGATAAGACACTTGTTCTTCAATTTTCTGTCAAGCATGAGCAGAAACTTGACTGCGGTGGTGGATATGTGAAGCTATTGAGTGGTGATGTTGACCAAAAGAAGTTTGGTGGAGATACACCTTACAGTATCATGTTTGGTCCAGACATATGTGGTTATAGTACAAAGAAGGTTCATGCAATTCTTGGTCATGGTGGAAAGAACCATCCTATTAAGAAGGATGTATCATGTGAAACGGATCAGCTTACTCATGTTTATACTTTTATTCTTCGCCCTGATGCTACCTACAGCATTCTCATTGATAATAAGGAGAAAGATTCTGGAAGTTTATACACCGAATGGGATATTTTGCCACCAAAACAAATTAAGGATCCTGATGCCAAAAAGCCAGAAGACTGGGAAGACAAAGAATACATTCCTGATCCAGAAGACAAAAAGCCTGAGGGATATGATGACATTCCGCAGGAAATTCCAGATTCAGATGCCACAAAGCCAGAGGACTGGGACGATGAGGAGGATGGGGAGTGGAAAGCTCCAACCATTCCGAATCCAGAGTACAAAGGACCCTGGAAGCCAAAGAAAATCAAGAATCCAAAGTACAAGGGAAAATGGGTTGCACCAATGATTGACAATCCAGATTTTAAGGATGATCCGGAACTTTATGTTTTCCCCAGTCTGAAATACTTAGGAATCGAACTATGGCAGGTGAAATCAGGAACATTATTTGATAACATTTTAGTATGTGATGATCCTGAATATGCGAAGAAGTTGGCAGAGGAGACATGGGGAAAACACAAGGATGCTGAAAAGAAGATGAGGAGGAGGAATCTAAGGATTCTGATGATGAGGACGTATCTGACGAGGCTGAAGAGCCAGAAGAGGACGAGGATAATGACGAGCATGACGAGTTGTAGGTGA___TAGGCATTACCCGGAACCTAGTTTGGGTGCAAGTGCTAACAATAATTCAAATGCTGTTGCTAGCTTAGTGAGAAATTATAACATGCTGCTAGTGTATTTGATGTCCAAAATGTTTTGGAACAAACTTGAGTTGATTTATATCAGGTCTTTTCCTGAAGGGGACGCATCAATTTTTCAGGGACTTAAGTTCAAATTAATCTGTTAACCAATGAAAACATTTATATTCCGAGAATTTT

Fln Alignment:

sp_v1.1_unigene26697___MASGGLVKLALLLICCASISSAHVYLEERFNDGWENRWVISDWKKDEGASGDWLHTAGKWNGDPEDKGIQTHPDARFFAISAEFPEFNNKDKTLVLQFSVKHEQKLDCGGGYVKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILGHGGKNHPIKKDVSCETDQLTHVYTFILRPDATYSILIDNKEKDSGSLYTEWDILPPKQIKDPDAKKPEDWEDKEYIPDPEDKKPEGYDDIPQEIPDSDATKPXXXXXXXXXXWKAPTIPNPEXXXXXXXXXXXXXXXXXXWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPEYAKKLAEETWGKHKDAEKK
B8LP55_______________MASGGLVKLGLLLICFASISSAHVYLDERFDDGWENRWVISDWKKDEGAAGEWLHTAGKWNGDPDDKGIQTHPDARFFAISAEFPEFNNKDKTLVLQFSVKHEQKLDCGGGYVKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILGHGGKNLPIKKDVSCETDQLTHVYTFILHPDATYSILIDNKEKDSGSLYTDWDILPPKQIKDPNAKKPEDWEDKEYIPDPEDKKPEGYDDIPEEIPDSDATKPEDWDDEEDGEWKAPTIPNPEYKGPWKPKKIKNPKYKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVSDDPEYAKKVAEETWGKHKDAEKE

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1392			5	94	1.0
1415		93		1	0.999955
1416		95	4		0.99999
1420	7	92			1.0
1425	7			92	1.0
1426			5	94	0.999995
1431	94	5			0.999997
1433		6	93		0.999999
1447	6	59		3	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain