SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26691

Length: 1360 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26691

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan endotransglycosylase n=1 Tax=Annona cherimola RepID=B8XXI5_ANNCH	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	xyloglucan endotransglucosylase hydrolase protein a	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 16	IPR000757	-	75%
Blast2go	Glycoside hydrolase, family 16, active site	IPR008263	-	75%
Blast2go	Beta-glucanase	IPR008264	-	75%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	75%
Blast2go	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	75%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	75%
Blast2go	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSP0

Fln msg:

Fln protein: MGGTWRTVGLSFLFLVFSGLIASVCSQSQGDDSSAKVFDDNFQIMWAEDHFRTSENGQVWHLVLDQNSGSGFKSKYKYRFGWFSMKLKLVPGDSAGVVTAYYMSSNTDMNRDELDFEFLGNRSGEPYALQTNIYAKGVGGREQRHILWFDPTTQFHTYSILWNSHQIVFFVDQVPLRVHRHTEATSDVFPKEQGMYMFSSIWNADNWATRGGLEKTNWTAAPFVSSYKKFHGLGCKWEDDNTTLLPCANDKNASASHWWDEAVAWTLTKKQRENYRWVNSKYLLYDYCNDQSRYSIKPVECSVAPWD*

Protein Length: 309

Fln nts: ACTCAGCAACTGCTTCTTTCTTTTGCTTTTGTAATT_-_ATGGGTGGGACTTGGAGAACAGTGGGATTGAGTTTCTTGTTCTTGGTGTTCAGTGGTCTGATTGCTAGTGTTTGTTCCCAGTCCCAAGGGGATGATTCATCTGCTAAGGTTTTTGATGATAATTTTCAGATAATGTGGGCTGAGGATCATTTCAGGACCTCTGAAAATGGCCAAGTATGGCACCTGGTTCTTGACCAGAACTCAGGTTCTGGGTTCAAGTCCAAGTATAAGTACAGATTCGGATGGTTTAGCATGAAGCTCAAGCTCGTACCGGGAGACTCTGCAGGAGTTGTCACTGCTTATTATATGTCTTCTAACACCGACATGAATAGGGACGAGCTGGACTTTGAGTTTCTGGGGAACAGAAGTGGAGAGCCATATGCTCTGCAGACAAACATCTATGCAAAGGGTGTGGGTGGAAGGGAACAGAGGCACATTCTCTGGTTCGATCCAACGACACAGTTTCACACTTACTCCATCCTCTGGAACTCTCATCAAATTGTGTTCTTCGTAGACCAAGTTCCTCTGAGAGTCCACAGGCACACTGAGGCTACGAGCGATGTGTTCCCTAAAGAACAGGGGATGTACATGTTTTCCAGCATTTGGAATGCAGACAACTGGGCAACCAGGGGTGGGCTTGAGAAGACCAACTGGACTGCCGCTCCATTCGTGTCATCGTACAAGAAATTCCATGGCCTCGGCTGCAAATGGGAGGATGACAATACAACCCTATTGCCCTGTGCTAACGATAAGAATGCAAGTGCAAGCCACTGGTGGGACGAGGCCGTAGCCTGGACTCTGACGAAGAAGCAGAGGGAAAATTACAGGTGGGTGAATAGCAAATACTTGCTCTACGATTACTGCAATGATCAGTCTCGCTACTCCATTAAACCAGTGGAATGCTCAGTTGCTCCCTGGGACTGA___ACACGATGATCTCACTGTCTCATATTTTCTCCGCTGGTTTGAACAAGAAGCTAAAAATCCGTGTCAGAGTATCGAACATAGTCAGCTTGCAATCTTGTTCTCAAATAAGTGCCTTATTGTGTTATAGTCATAGTCAGCCAATAGTATCGGGTTTGACTTTAAGAATGATTGCCTTATCTGTACAAATAATCCGTACCCACAAATTACGCTGCTAGCTTGTACAGATTAGACTTTTGTAGATACACCGTATGAATATGGAATCGATAAAATTCTACTGTCAGACCTTTCTGTTTATATGGAAACAGATCAGTATGGTTCATATTCGATCAATAGGAATAGATTTATTCGCTCAAAAGTCACAGCTTGTTTTAAACTTCCTTCCATCCTTTTATATATATTA

Fln Alignment:

sp_v1.1_unigene26691___MGGTWRTXXXXXXXXXXXXXIASVCSQSQGDDSSAKVFDDNFQIMWAEDHFRTSENGQVWHLVLDQNSGSGFKSKYKYRFGWFSMKLKLVPGDSAGVVTAYYMSSNTDMNRDELDFEFLGNRSGEPYALQTNIYAKGVGGREQRHILWFDPTTQFHTYSILWNSHQIVFFVDQVPLRVHRHTEATSDVFPKEQGMYMFSSIWNADNWATRGGLEKTNWTAAPFVSSYKKFHGLGCKWEDDNTTLLPCANDKNASASHWWDEAVAWTLTKKQRENYRWVNSKYLLYDYCNDQSRYSIKPVECSVAPWD
A9NSP0_______________MGGTGRVMGMSFLFLALIGLIGRVCCQSNGDDSSAKVFDDNFQIMWAQDHFRTSENGHVWHLVLDQNSGSGFKSKYKYRFGWFSMKLKLVPGDSAGVVTAYYMSSNTDMNRDELDFEFLGNRSGEPYALQTNIYAKGLGGREQRHILWFDPTTQFHTYSILWNSRQIVFFVDQVPVRVHRHTEATSDVFPKEQGMYMFSSIWNADNWATRGGLEKTNWAAAPFVSSYKKFHDLGCKWEDDNTTL--CANNNNASASHWWDEAVAWTLTKKQREYYRWVNSKYLIYDYCHDQSRYSIKPVECSVAPWD

SNPs (tot: 8)

Position	A %	G %	T %	Probability
656	16		83	0.999991
876	1	98		0.941695
878	98	1		0.941695
1117	94	5		0.986407
1238	4	61		1.0
1259	10	90		0.90298
1274		25	75	1.0
1300		75	25	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain