SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26685

Length: 1940 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene26685 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Flocculin, putative n=1 Tax=Trichomonas vaginalis RepID=A2FIF9_TRIVA	-	-	2.0e-11	28%
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	0.0	31%
Blast2go	hypothetical protein Strop_1435 [Salinispora tropica CNB-440]	-	-	1.29593e-11	48%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F2D3Y3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 423 - 720

Fln protein: S*PWLHVVTLAVTCHFSAEHFLFIRKSDFCKLWPHGSQALCLHFSSSASNSPACDKASASHSPACDKASASISSSTCRTKTPTSWNFPGSSTTQISIPAGIHSSSDTSPNTQAPSTQAPHQASTSVHAPG*TSAGIHSPCNSSTRTQASNQASTSLHSPHQASTSPHSPHQASTSPHSPYQATTSLQAPHQDTTRAQTPTTWNFTSSSPSISQT*TPSSLQAPSTCHPSTSYQASSSLQAPSTCHPSTSYQASSSLQAPSPSYPSTSNQASTSLQATSPSHPSTSSQASPSLQATSPSHPSTSSQASPSLQATSPSYPSTSSQASPSSQATSTSHPSTSCQASTSLQAPSASHSSTSCQASTSLQAPSPSHPTTSDQAPPCSQASSPSHPPTSDQASSSLQAPSASHPTTSWNFSSPSPTYS*

Protein Length: 424

Fln nts: CGTCGTGACCTTGGCTTCACGTCGTGACCTTGGCTGTCACTTGCCATTTTTCTGCTGAGCATTTCTTGTTTATTCGCAAGTCAGACTTCTGCAAGTTATGGCCACACGGCTCCCAAGCCTTATGCTTACATTTCTCCTCCTCCGCCAGTAATTCCCCCGCCTGTGATAAAGCCTCCGCCAGTCATTCCCCCGCCTGTGACAAAGCCTCCGCCAGTATATCCTCCTCCACATGTCGTACCAAAACCCCCACCTCATGGAATTTCCCCGGTTCATCCACCACCCAAATCTCCATCCCCGCCGGTATACACTCCTCCAGTGATACATCCCCCAATACACAAGCCCCCAGTACACAAGCCCCCCATCAAGCCTCCACCAGTGTACACGCCCCCGGTTAAACCTCCGCCGGTATACACTCACCCTGTAATTCATCCACCAGAACACAAGCCTCCAATCAAGCCTCCACCAGCCTACATTCCCCCCATCAAGCCTCCACCAGTCCACATTCCCCCCATCAAGCCTCCACCAGTCCACATTCCCCCTATCAAGCCACCACCAGTCTACAAGCCCCCCATCAAGACACCACCAGGGCCCAAACACCCACCACATGGAATTTCACCAGTTCATCCCCCTCCATTAGTCAAACCTAAACCCCCTCCAGTTTACAAGCCCCCAGTACCTGTCATCCCTCCACCAGTTATCAAGCCTCCTCCAGTTTACAAGCCCCCAGTACCTGTCATCCCTCCACCAGTTATCAAGCCTCCTCCAGTTTACAAGCCCCCAGTCCCAGTTATCCCTCCACCAGTAATCAAGCCTCCACCAGTTTACAAGCCACCAGTCCCAGTCATCCCTCCACCAGTAGTCAAGCCTCCCCCAGTTTACAAGCCACCAGTCCCAGTCATCCCTCCACCAGTAGTCAAGCCTCCCCCAGTTTACAAGCCACCAGTCCCAGTTATCCCTCCACCAGTAGTCAAGCCTCCCCCAGTTCACAAGCCACCAGTACCAGTCATCCCTCCACCAGTTGTCAAGCCTCCACCAGTTTACAAGCCCCCAGTGCCAGTCATTCCTCCACCAGTTGTCAAGCCTCCACCAGTTTACAAGCCCCCAGTCCCAGTCATCCCACCACCAGTGACCAAGCCCCCCCCTGTTCACAAGCCTCCAGTCCCAGTCATCCCCCCACCAGTGACCAAGCCTCCTCCAGTTTACAAGCCCCCAGTGCCAGTCATCCCACCACCTCATGGAATTTCTCCAGTCCATCCCCCACCTATTCCTAA___GCCCAAACCACCTCCATCTCCATACCACAAGCCACCCTATTCCTACAAGTCTCCTCCTCCTCCATACTATTAGCTAAGTTGCTGCAGATGGTTCGAGGTAACGCAATAAAAAAGGCGTTTTGGTGCAGACCATGGACGTTCTTTAATATGTTTTCTGAGGTCTCCAGTGCGAGTATAATATGGAAGACCTCTATAGTATATGAAGAAAGCGCCAGACTTCCAATCCTCAACCTTTAACTGCCACTTCTGATAGTATTATGCTTATACCATGGCGTCCACGCGTTTCTAGAAGAGTTTGTAGTGGTTGTGTTTGATATAATCCTATCTGGAAAGAACTCAAAAGCTGTTCAATATTTTTATTTTTACTGTTATCTATGATTATATGGAGTTTCTTCCTTTCTATGTGGGAAATCTATGGCATAGAGCTTTGTATGCTTTTAACTGAGCCTCCTTTGATTTATTCGAAGAAGTATTGGAATAAAGCTCGTTTTGATAATATTGGAATAAATATAAGAGTTACATGTTTGGAAAATGTATTTGCTTAAGTGGATGTCTCTGTGAGGCTCATTTCGTGAACTCCTTTACGAGATTTTCTGCTGTCTCGGAGATTTACTAATATCACTTTTAAAGTTGTTACTCTAATTTAATAATGCAAGGTGGATTTGACTT

Fln Alignment:

sp_v1.1_unigene26685___FIRKSDFCKLWPHGSQALCLHFSSSASNSPACDKASASHSPACDKASASISSSTCRTKTPTSWNFPGSSTTQISIPAGIHSSSDTSP--NTQAPSTQAPHQAST--SVHAP--G*TSAGIHSPCNSSTRTQASNQASTSLHSPHQASTSPHSPHQASTSPHSP----YQATTSLQAPHQDTTRAQTP--TTWNFXXXXXXXXXXXXXXSLQAPSTCHPSTSYQASSSLQAPSTCHPST
F2D3Y3_______________FITSRPSCKQATADGAWNCIS-GAPAQRPPAQCAAAASHPFDCSKAQCQFSAYTPATPAPGGGKPSGPSYP--SPPSSTTTPSSHSPPKGSGTPSYPSPHQGSTTPSYHSPPQGSTTPSPPGSTTPSYPTPPSSSSTPSYHSPPQGSTTPSPP--GSTTPSYPTPPSSSSTPSYHSPPQGSTTPSSPGSTTPSYPTPPSSSSTPSYHSPPQGSSTPSPPGSTTPSYPTPPSSSSTPSS

SNPs (tot: 72)

Position	A %	C %	G %	T %	Probability
758		2	97		0.933298
763	2			97	0.944212
771			97	2	0.971188
772		4	87		1.0
779			97	2	0.974293
783		97	2		0.974293
785		2	97		0.975753
787	97	2			0.975753
788		2	97		0.975753
790		97		2	0.975753
791	2			97	0.97849
792	2			97	0.97849
794			3	96	0.980996
796	93	6			1.0
800		6	90	4	0.999972
895		9	90		0.999872
896		9	90		0.999872
956		11		88	0.923564
957		11	88		0.923564
958	88	11			0.923564
960		88		11	0.923564
988		12	87		0.992554
989	75	12	12		0.975346
990		12		87	0.992554
992	87			12	0.992554
1072			66	33	0.997452
1383	96	4			0.99411
1412	6	1		91	1.0
1417	7		1	91	1.0
1419		8	91		1.0
1420	1	8		89	1.0
1422		1	89	1	1.0
1427	9			90	1.0
1428		7		92	1.0
1431		7		92	1.0
1437		2	78		1.0
1450		4		95	0.995881
1461		4		95	0.997218
1499	2	5		91	0.99441
1500	5	2		91	0.99441
1501	5		94		0.998578
1502	5		2	88	0.982716
1505		5	2	91	0.99441
1506	8	91			1.0
1507	2	8		88	0.999999
1509	5		94		0.998578
1510	2	8		88	1.0
1511		6	93		0.99903
1514			7	92	0.999664
1517	86	13			1.0
1518		19		80	1.0
1519		14	4	80	1.0
1521		85		15	1.0
1602			27	72	1.0
1817			92	7	0.999664
1820			11	88	1.0
1821	88			11	1.0
1823		8	91		1.0
1824		8	91		1.0
1826	8		8	82	0.999998
1827	9			90	1.0
1830			90	9	1.0
1833	9	87		3	1.0
1897			37	12	1.0
1898	37		56		1.0
1899		40		6	1.0
1900	40		6		1.0
1907	81			18	1.0
1910	13	86			0.999973
1913		13	86		0.999973
1914			86	13	0.999973
1918		86		13	0.999973

SSRs (tot: 1)

Start position	End position	Sequence	Length
607	619	GGA GGA GGA GGA G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain