SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26679

Length: 981 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26679

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleoside diphosphate kinase n=2 Tax=Picea sitchensis RepID=A9NPA6_PICSI	-	-	94%
FL-Next	sp=Nucleoside diphosphate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	nucleoside diphosphate kinase i	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	93%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	93%
Blast2go	binding	GO:0005488	Molecular Function	93%
Blast2go	transferase activity	GO:0016740	Molecular Function	93%
Blast2go	peroxisome	GO:0005777	Cellular Component	93%
Blast2go	chloroplast	GO:0009507	Cellular Component	93%
Blast2go	plasma membrane	GO:0005886	Cellular Component	93%
Blast2go	apoplast	GO:0048046	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nucleoside diphosphate kinase	IPR001564	-	0.0	93%
Blast2go	Nucleoside diphosphate kinase, active site	IPR023005	-	0.0	93%

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
120		83		16	0.994512
216	14	85			0.993533
219	85		14		0.993533
311		90		10	0.90298
441		6	93		0.999453
443	93	6			0.999453
444	93		6		0.999453
445			93	6	0.999453
448	93	6			0.999453
453	93		6		0.999453
454			6	93	0.999453
456		93		6	0.999453
457	93		6		0.999453
459		6	93		0.999453
460	6		93		0.999453
461	93	6			0.999453
462	93			6	0.999453
463		6	93		0.999453
464	6			93	0.999453
527			94	5	0.998894
529	88			5	0.988099
531	87			12	1.0
785	0	2		97	0.972529
863		2		97	0.998162
884	2	16	1	79	1.0
886	94		5		0.998894
887	93			6	0.999364
890	17	4		78	1.0
891	9			90	0.999872
920	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain