SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26662

Length: 1500 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26662

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glyco_hydro_3_C domain containing protein	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	beta xylosidase	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	0.0	72%

Source	KEGGs	Term	Identity
Blast2go	Starch and sucrose metabolism	00500	72%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	72%
Blast2go	Metabolic pathways	01100	72%

Source	GOs	Term	Type	Identity
Blast2go	xylan catabolic process	GO:0045493	Biological Process	72%
Blast2go	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	72%
Blast2go	apoplast	GO:0048046	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABI5

Fln msg: your sequence is longer than subject: 341 - 304

Fln protein: MIGNYAGIPCRYTTPRQGLGKYATTIYKPGCQNVACQRNPTLIQDASQAASRADATVIIVGADQSVEREGLDRGSLLLPGQQEQMVLEVTAASRGPVILVVMSGGPMDISFARDSTKISSILWVGYPGQAGGDALADIIFGHHNPGGRLPVTWYPQDFVTRVPMTNMNMRPDRATGYPGRTYRFYTGKAVYPFGYGLSYTTFSHSLVHAPEMVSLSLDGNQLLSCLGTNNSCNSVDVENTKCEGLLLDVHLDVQNTGSRDGGHAVLLFSSPPTVHGAPQKNMVGFRKVHVGAGATERVHFSIDVCKDLSIADESGAKKLPLGSHLLHVGDVQHSLNLQIE*

Protein Length: 342

Fln nts: GTTGTAGTGAACAACATCAGCAGCTGGCCTTAGAGGCTGCAAGGCAGGGAATAGTTCTGTTAAAAAACAATAATAGAGCATTGCCATTATCCCAAACCAAAACAAGAACATTGGCTGTCATTGGACCCAATGCAGATGTCACCAACGTC_-_ATGATTGGCAACTATGCAGGTATACCATGTAGATACACAACACCCCGACAAGGTCTGGGTAAATATGCAACAACTATATATAAGCCTGGCTGTCAAAATGTGGCCTGCCAAAGAAATCCTACGCTCATACAGGATGCTTCACAGGCAGCATCTCGAGCAGATGCCACAGTAATAATTGTAGGAGCAGACCAATCTGTAGAAAGAGAAGGGCTTGACAGAGGGAGCCTGTTATTGCCTGGGCAACAAGAACAAATGGTGTTAGAAGTAACAGCTGCATCAAGAGGACCAGTGATACTTGTAGTGATGTCAGGGGGACCAATGGACATTTCATTTGCCAGAGATAGCACCAAGATATCGAGTATTCTGTGGGTGGGATATCCAGGTCAAGCCGGAGGAGATGCGTTGGCTGACATAATCTTTGGTCATCACAATCCAGGGGGTAGATTGCCTGTAACATGGTACCCACAAGATTTTGTAACAAGAGTACCCATGACAAACATGAACATGCGTCCTGATCGTGCAACTGGCTACCCAGGCCGAACTTACAGATTTTACACAGGGAAAGCAGTTTACCCATTTGGCTATGGATTGAGCTACACAACTTTCTCTCATTCTCTGGTCCATGCACCAGAGATGGTTTCCTTGTCCCTCGATGGAAATCAACTTCTGTCATGCCTTGGAACGAACAATTCCTGCAATTCTGTCGACGTGGAGAACACCAAATGCGAGGGATTGCTCCTTGATGTTCATCTGGATGTGCAGAACACGGGCAGCAGAGATGGAGGGCATGCTGTGCTCTTGTTTTCTAGCCCCCCTACAGTTCATGGGGCTCCACAGAAGAACATGGTGGGATTCAGAAAGGTCCATGTTGGTGCAGGAGCCACAGAAAGAGTGCATTTCAGCATTGATGTTTGCAAAGATCTGAGCATTGCAGATGAGAGTGGTGCCAAGAAATTGCCACTGGGTTCTCATCTTCTTCATGTTGGAGATGTGCAGCATTCCCTTAATCTTCAAATTGAATGA___CAGGAGATTAAGGCTTTAAATATCAATTGATTTCAGATTAGAGTGATGCAACAGCTACAACTTATAAAAGCTCCTGGTTGTTGCTGTTGGGTAATAATAGTTTGGGTAATGGTCGTTTATTACTGGGAAGCCAATGTAATTGTAGATACCGTGGTGCGTTCTGGTGGAGTCACTTCAAATATGAAAGTTTGTAAAATGGCAACATAGACTTTTCGATCAATATGAACAAGTTTTCAACTGTAGCCCATTTGGGAAAGAACCATCGCTTTCCCAGGAGGCGTTGATTGTTTTTTTCATATTTTGTTTGAAAATGTTTTATTATTTTACT

Fln Alignment:

sp_v1.1_unigene26662___VIIVGADQSVEREGLDRGSLLLPGQQEQMVLEVTAASRGPVILVVMSGGPMDISFARDSTKISSILWVGYPGQAGGDALADIIFGHHNPGGRLPVTWYPQDFVTRVPMTNMNMRPDRATGYPGRTYRFYTGKAVYPFGYGLSYTTFSHSLVHAP-EMVSLSLDGNQLLSCLGTNNSCNSVDVENTKCEGLLLDVHLDVQNTGSRDGGHAVLLFSSPPTVH-GAPQKNMVGFRKVHVGAGATERVHFSIDVCKDLSIADESGAKKLPLGSHLLHVGDVQHSLNL
D5ABI5_______________IVVVGLDQTQEKEERDRIKLTLPGQQENLVYQVSRAAKRPVVFVILSGGPVDVSFAVNDPQISSIIWAGYPGQAGGQALAEIIFGDYNPGGRLPMTWYPQDFV-KIPMTDMNMRPNHDTGYPGRTYRFYTGKKVFEFGQGLSYSAYSYNFSSTTIQKIDLNVT-MEHFEALG-NRGKGHVRVENTPCRKLKFRSSIFVRNHDKMDGRHAVLLYSKSPATHKGAPQKQLIGFRSVHVQGKHTAKVTFVVKPCDHFSTVEENGQRLLAIGSHSLIVGDTQYPVSL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1076		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain