SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26646

Length: 1530 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26646

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cinnamoyl-CoA reductase-related (EC:1.2.1.44)	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	cinnamoyl- reductase-like protein	-	-	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	68%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVV1

Fln msg:

Fln protein: MDAYLEENGYSASNSRKLMCLTGGWSFLGIHIARMLLGRGYSVRFAIPVTPEEAGSLMESEEALSGKLEICQADLLDYRSVFGNINGCSGVFHVPAPCDHLDGLQEYPTDSIDYEVQSALNVVEACAAAESVKRLVFTSSVSAIVCGRRTGNLGDGEIMDEKCWTNLEFCREKKLWSPLAKTLSEKAVWALSNDRDLNLVVVNPASVIGPHLSNPSSHTILNQLKGSKALQQNGISAICAYVDVEEAALAHVAAFECENATGRYICLQRVFTEDEIKEVIWSSHMTSNYRPESLLHPEKPLNLSNEKFLKLKRQYSGELA*

Protein Length: 322

Fln nts: CAGTGGGTATCAACGCAGAGTACATGGGCCTCCCTCTGATCAGAGCTTGAAGCTCTGTCTTCTCTGATATCGCTTCATTCCATCATCCAGGAGCTTCTGTTGTATCCATTCCCTCAAA_-_ATGGATGCCTACCTTGAAGAAAATGGATACAGCGCTTCCAATTCTCGGAAATTAATGTGCCTTACCGGGGGCTGGAGTTTCCTGGGTATTCATATCGCAAGAATGCTGCTCGGCCGGGGTTACTCAGTCCGTTTCGCAATTCCTGTAACGCCAGAAGAGGCAGGCTCACTTATGGAATCCGAAGAAGCATTATCGGGGAAGCTGGAGATATGCCAAGCCGATCTCTTGGATTATCGCAGCGTTTTCGGCAACATCAATGGCTGCTCCGGAGTTTTCCACGTCCCTGCGCCCTGTGATCATCTGGATGGATTACAGGAGTATCCGACTGATAGCATAGACTACGAGGTTCAAAGCGCGTTGAATGTGGTGGAAGCCTGCGCTGCCGCAGAGAGTGTGAAGCGTTTGGTGTTCACTTCCTCTGTATCGGCCATTGTTTGTGGGAGGAGGACTGGCAATCTTGGCGATGGTGAAATTATGGACGAGAAGTGCTGGACCAATCTTGAATTTTGTCGTGAAAAGAAGTTGTGGTCGCCATTGGCAAAGACTCTCTCAGAGAAAGCTGTATGGGCACTCTCAAATGATAGGGACCTTAACCTAGTAGTAGTGAATCCTGCTTCAGTCATTGGGCCCCATCTCTCAAATCCTAGTTCACATACCATTTTAAACCAATTGAAAGGATCGAAGGCACTACAGCAGAATGGTATTTCTGCTATCTGTGCATATGTAGATGTGGAAGAAGCGGCGCTTGCACATGTTGCTGCCTTTGAATGTGAAAATGCAACAGGCAGATACATATGTTTGCAGAGGGTGTTTACAGAAGATGAAATAAAAGAAGTTATATGGAGCTCTCATATGACATCAAATTACAGGCCGGAGAGTTTGTTGCATCCTGAGAAGCCACTGAATCTTTCCAACGAGAAGTTTTTAAAGTTGAAAAGACAATATTCTGGAGAGCTGGCATAG___TTGCACCTACCTCTGATCTGTGGTGGTCAGGTCACGATATATATAAGCAACCAACCAAGTTTAGAGGAAATAAATAAAAAATAGGAATAGTACTTTAGTATTATATATCTATGAGATATTTATAATTTTCCCCTTATTCCAGAGGGGAAGATAAATCTCATTAATGTAGTTAGCTTTACCTTACCTTTCATATGGATATGGCCTTTTCTTCTTACAGCGGGCCACTTAGCTTCTTCCCATGGGTCACTTATCTTCTGGTCAGGAAGGGGTTCAATTATGACTTTATTTAGCCTTCATGTAGTTTCTATATATACATTTTATTATTAATTTGTTTATCTTACTTCCAATGGGTCACTTATCTTCTGGTCAGGAAGGGATTCAATTATGGCTCTATTTAGTTTTCATGTAGTTTCTTACATATACCTTTATTATTAATTTGTTTATAAAAG

Fln Alignment:

sp_v1.1_unigene26646___MDAYLEENGYSASNSRKLMCLTGGWSFLGIHIARMLLGRGYSVRFAIPVTPEEAGSLMESEEALSGKLEICQADLLDYRSVFGNINGCSGVFHVPAPCDHLDGLQEYPTDSIDYEVQSALNVVEACAAAESVKRLVFTSSVSAIVCGRRTGNLGDGEIMDEKCWTNLEFCREKKLWSPLAKTLSEKAVWALSNDRDLNLVVVNPASVIGPHLSNPSSHTILNQLKGSKALQQNGISAICAYVDVEEAALAHVAAFECENATGRYICLQRVFTEDEIKEVIWSSHMTSNYRPESLLHPEKPLNLSNEKFLKLKRQYSGELA
A9NVV1_______________MEGYLEENGYGASDSRRLMCVTGGWSFLGIHIARMLLGRGYSVRFAIPVTPEEAGSLVESEEALSGKLEICQADLLDYRSVFGNINGCSGVFHVPAPCDHLDGLQEYPTDSVDYEVQSALNVVEACAGAESVKRLVFTSSVSAIVCGRRIGNLGDGEIMDEKCWTNLEFCREKKLWSPLAKTLSEKAVWALSNDRDLNLVVVNPASVIGPQLSNPNSHTILNQLKGSKALQQNG---MCAYVEVEEAALAHVAAFECENARGRYICLQRVFTEDEIKQVIWSSHMTSNYRPEDLLHPEKPLNVSNEKFLKLKRQYSGELA

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1311	22	77			0.999999
1313			22	77	0.999999
1314		77	22		0.999999
1315			22	77	0.999999
1417		14		85	0.993533
1438	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain