SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26639

Length: 1476 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene26639 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pro-resilin n=3 Tax=Andropogoneae RepID=B6T4Q5_MAIZE	-	-	8.0e-26	30%
FL-Next	tr=Putative uncharacterized protein; Pinus halepensis (Aleppo pine).	-	-	0.0	88%
Blast2go	protein	-	-	0.0	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q5Y2E6

Fln msg:

Fln protein: MAGYARDSVDDFDDYDPTPFGGGYDQGVTYGKSRPPSEETCYPPSQAGDESSHDFSYGSESCPYGGAGGAHDIDEQRPTYGSGSTPSYEAEESTYGGGGGGFDYGRPKPQSQPAYGYGHEPKPQPAYGYGHEPKPQPAYGSKPNPYGDQYEEKPSWDIPHQDYQSGYSDDKYGDEVKPSFGRRPSYGQQEEEIDPPRFGRPPSNYEQQEEEPPRFERPPSYYQQEEEPPKFVRPSSYYQEEEPPKFQKPSSYYQEEEEPPKFERPPSYYQQEEEPAKSERPSYYQPDQEEGGYQRPQYGNDYKEPKHGHHHHHRKYSDE*

Protein Length: 321

Fln nts: AAAAGAAATTCCGAACAGCCGGAAAACGCATCTCGTTGGCAAAATGTGCTGCTTTCCACGTGGATATGGATTTGAACGGATGAAAGGAAACCGCGGTTTTTATGGAAAGCAATCGACATCATCAAAAAGGAGTGAACGCGCAGCACCGACTTATTAGATTTAAATATCGAATGGTTATTGCAGTGGAGATATAAGTTGTTGCGAGAACAGGTGTGGAGATTTCAATTGAGGCAGCCTTGCGGGAAGTTCAAGAATTGGGAGAAACAAACTAAGCTCGGAGTA_-_ATGGCTGGATATGCTCGTGATTCAGTTGACGACTTTGATGACTACGATCCTACTCCCTTTGGCGGTGGATATGATCAGGGAGTCACCTATGGTAAATCCAGGCCTCCCTCTGAAGAAACTTGTTATCCTCCCAGTCAAGCAGGGGACGAGTCGTCCCATGACTTTTCATATGGATCGGAGTCATGCCCTTACGGAGGAGCAGGAGGAGCCCATGATATAGATGAACAGAGACCCACATATGGATCCGGATCCACCCCTTCCTATGAGGCAGAGGAATCCACTTATGGTGGTGGTGGTGGAGGATTTGATTATGGGAGGCCCAAGCCTCAGTCTCAGCCTGCATATGGGTATGGGCATGAGCCCAAGCCTCAGCCTGCATATGGGTATGGGCATGAGCCCAAGCCTCAGCCTGCATACGGGTCGAAGCCCAATCCATATGGAGATCAGTATGAGGAAAAGCCTAGCTGGGACATTCCACACCAGGATTACCAGTCTGGGTATTCTGACGATAAATACGGAGACGAGGTTAAGCCGAGTTTTGGAAGGAGGCCTAGCTATGGTCAGCAGGAGGAGGAAATAGATCCACCTAGGTTTGGGAGACCCCCCAGTAATTATGAACAGCAGGAGGAGGAGCCTCCCAGGTTCGAGAGACCCCCAAGTTACTATCAGCAGGAGGAGGAGCCTCCCAAGTTCGTGAGACCCTCCAGTTACTATCAGGAGGAGGAGCCTCCCAAGTTCCAGAAACCCTCCAGTTACTATCAGGAGGAGGAGGAGCCTCCCAAGTTCGAGAGACCCCCCAGTTACTATCAGCAGGAGGAGGAGCCTGCCAAGTCTGAGAGGCCCAGTTATTACCAACCTGACCAGGAAGAAGGAGGATATCAGCGCCCTCAATATGGAAATGACTATAAGGAACCCAAGCATGGACATCACCATCACCACCGCAAATATTCTGATGAATGA___TGTGAATAGCTAATGTTTTACTCACGAGTAAAACTTAACCATGGGGCATTGTCGTGCATACTCCAATAAGATTTCCTTTTAGCGCGGGAAATCCACTGCAATATTATAAATGCTATTTTTATAATATGTTGCTGATAAACTGGATGACTTGGGTATAAATTTCAATGGATATACTTACTACATATCACTTTAATGTTTAATATATAGCTAATAAGGTATTGTTATATGTGATTT

Fln Alignment:

sp_v1.1_unigene26639___MAGYARDSVDDFDDYDPTPFGGGYDQGVTYGKSRPPSEETCYPPSQAGDESSHDFSYGSESCPYGGAGGAHDIDEQRPTYGSGSTPSYEAEESTYXXXXXGFDYGRPKPQSQPAYGYGHEPKPQPAYGYGHEPKPQPAYGSKPNPYGDQYEEKPSWDIPHQDYQS-GYSDDKYGDEVKPSFGRRPSYGQQEEEIDPPRFGRPPSN----------------YXXXXXXXXXXXXXXXXXXXXXXXPKFVRPSSYYQEEEPPKFXXXXXXXXXXXXXXXXXXXPSYYQQEEEPAKSERPSYYQPDQEEGGYQRPQYGNDYKEPKXXXXXXHRKYSDE
Q5Y2E6_______________MAGYARDSVDDFDDYDPTPFGGGYDQGVTYGKSRPPSEETCYPPSQAGDESSHDFSYGSESCPYEG-GGAHDIDEQRPTYGSGSTPSYEAEESTYVGGGGGSDYGRPKPQSQPAYGYGHEP------------EPQPAYGSKPNPYGDQYEEKPSWNIPHQDYTSPGYSDDKYGDEVKPSFGRKPSYGQQEEEIDPPRFGRPPSNYEQQEEEPPRFQRPPSYHQQEEEPPRFERPPSYYQQEEEPPKFVRPSSYYQEEEPPKFQKPSSYYQEEEEPPRFERPPSYYQQEEEPAKSERPSYYQPDQEEGGYQRPQYGNDYEEPKHGHHHHHRKYSDE

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
1095		2		97	0.927345
1096		2	97		0.927345
1198			1	95	0.999158
1211		2		97	0.951554
1228			97	2	0.967822
1229	97		2		0.967822
1231		96	4		0.999968
1233			2	97	0.969538
1234	2	97			0.971188
1236	2	97			0.972772
1244	2			97	0.97849
1246		97		2	0.979771
1248	1	7		90	1.0
1250	88	9	1		1.0
1251	95	3		1	0.911382
1252		4		95	0.999991
1253		5		94	0.999996
1254	1	10	87		1.0
1255	88	11			1.0
1256	90	9			1.0
1257	96	3			0.99245
1258	3	1		94	0.95615
1260		6		90	0.999997
1264		92		7	1.0
1278	33		66		1.0
1281	91	8			0.999766
1283		8		86	0.999539
1284		8		86	0.999539
1285	73	17			1.0
1287	25	43			1.0
1288		75		25	1.0
1290	18	81			1.0
1291	80	20			1.0
1294		16	83		0.994512
1296	83	16			0.994512
1307	40		60		1.0
1353	75		25		0.996473

SSRs (tot: 2)

Start position	End position	Sequence	Length
421	434	CTC CTC CTC CTC CT	14
896	910	CCA CCA CCA CCA CCA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain