SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26623

Length: 874 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26623

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UPL5; UPL5 (UBIQUITIN PROTEIN LIGASE 5); acid-amino acid ligase/ binding / ubiquitin-protein ligase; K10591 E3 ubiquitin-protein ligase NEDD4 [EC:6.3.2.19]	-	-	4.0e-35	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	ubiquitin-protein upl5	-	-	0.0	70%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ubiquitin--protein ligase.	EC:6.3.2.19	-	4.0e-35	42%

Source	InterPros	Term	Type	e value	Identity
Blast2go	HECT	IPR000569	-	0.0	70%

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
343	90			9	0.999872
345		9	90		0.999872
351	9	90			0.999872
650	20		80		0.995493
678		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain