SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26598

Length: 865 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene26598 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ccaat-binding transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RHZ1_RICCO	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	protein	-	-	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTJ8

Fln msg: atg_distance in limit (1-15): atg_distance = 10,

Fln protein: MPMHYRATPYPNAQLQPNIAHGAFQQPSIHGHPHALSSHHNQLPYQQQIHQHQRQLHHHQQQQIEVFWANQMQEIEQAVDFRNHSLPLARIKKIMKSDDENVRMISAEAPVVFAKACEMFINELTLRAWIHTEENKRRTLQKNDIAAAIARTDIFDFLVDIVPRDELKEDQVINLGTPTASLSVGSSSSNVGGANSFPFYYLPNQHSAPRGVIVGKPMDPAIYMQQPRSPVAYMHNMLQRGYMHTDESKSPNSG*

Protein Length: 256

Fln nts: _-_ATGCCTATGCATTACAGGGCAACGCCTTATCCGAATGCTCAGCTGCAGCCTAACATTGCTCATGGAGCGTTCCAGCAGCCCTCCATTCATGGCCATCCTCATGCTCTATCTTCCCACCACAATCAATTGCCTTATCAGCAGCAAATTCATCAGCACCAACGCCAGCTGCATCATCACCAGCAGCAGCAGATCGAGGTTTTCTGGGCTAACCAGATGCAGGAAATCGAGCAAGCTGTCGATTTCAGAAATCACAGTCTCCCTCTCGCGAGAATCAAGAAGATAATGAAGTCAGACGACGAGAATGTCAGGATGATATCTGCGGAGGCTCCCGTGGTGTTTGCCAAGGCCTGCGAGATGTTCATCAATGAGCTTACTCTAAGGGCCTGGATTCACACTGAAGAAAACAAGAGACGAACCCTGCAGAAGAACGATATAGCTGCGGCCATAGCTAGGACTGATATTTTCGATTTTCTGGTCGATATTGTGCCGAGGGATGAGTTGAAGGAGGATCAGGTTATCAATCTTGGAACCCCTACAGCTTCTCTCTCAGTTGGAAGCAGCAGTTCTAACGTTGGTGGTGCTAATTCTTTCCCTTTTTATTATCTACCCAACCAGCATTCTGCGCCCCGTGGAGTCATTGTTGGGAAACCTATGGATCCCGCTATTTATATGCAACAGCCACGGTCTCCTGTGGCCTATATGCACAATATGTTGCAGCGTGGATACATGCACACAGACGAATCAAAATCACCCAACTCTGGATAG___CTAAGGCATGATGACCTGATCATGATGTGTTTGAGGGCTGCATCTTCATTTTATCTTCCTTTTGGGCTTTCTTTTCTCTGTCTGTTTTCAAGATTACCAT

Fln Alignment:

sp_v1.1_unigene26598___MPMHYRATPYPNAQLQPNIA-HGAFQQPSIHGHPHALSSHHNQLPYXXXXXXXXXXXXXXXXXQ--IEVFWANQMQEIEQAVDFRNHSLPLARIKKIMKSDDENVRMISAEAPVVFAKACEMFINELTLRAWIHTEENKRRTLQKNDIAAAIARTDIFDFLVDIVPRDELKEDQVINLGTP-TXXXXXXXXXXXXXXXXSFPFYYLPNQHSAPRGVIVGKPMDPAIYMQQPRSPVAYMHNMLQRGYMHTDESKSPNSG
A9NTJ8_______________MPMHYRAMPYPNTQIQPNIAAHGAFQQPPIHAHHHALSSHHNQLPYQHQQQIHQHQRQLHHQQQQQIEVFWANQMQEIEQAVDFRNHSLPLARIKKIMKSDDENVRMISAEAPVVFAKACEMFINELTLRAWIHTEENKRRTLQKNDIAAAIARTDIFDFLIDIVPRDELKEDQVINLGNPRSALSVGSSSTNAAAGANSFPYYYLPNQHSVPHGVFVGKPMDPTIYMQQPQSPVAYMPNIWQWGHMQADQSKSPNPG

SSRs (tot: 1)

Start position	End position	Sequence	Length
677	688	CTG CTG CTG CTG	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain