SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26586

Length: 2882 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene26586
ATGGGAAAAATGCCATTCAGCGAAGCCGATGCAGAGCGAGCTGTGCCGGATGCATGTGGGATTCTGATGTATTGGGTGAGGAACTTGGAAGGAAAAAAAAAAAGACAGTCCTCGGGATTTACTGTAGCGGTGGCTATGGAGGGGCCCTAGTAATAATATTGTTGCTGATACAGTTGGTTGGTGGTTATGCATAAGGCCCGACTCCTCCCCTTGCTTGGTATTCTTTTACTTGATATATTTGTTGGGTATCGAGGATTATTGTTTCTGGTCCAGTTAGTGGGTTTATTGCTGAGTTTGTGGAGATAATCAATCGAGTGTTCTGTCTGATACAGGCGAAGAAGAAGCTTATCAGAACAAACAAAAGAAGATTTTTTGTTTTTAATTCTTTTTCCTTACCAAGGGAAAAGTAAGCAGCAGTGTGGAAGGATTGATTTTGTTGCCCTTTTTTATGTTTTGGTTTGTTGTTCTGTGATAACCCAAGTACGATTCGAGGATAACAGCGAACGAGACTACTGAATATTGGCATTGCTTTGGAGATTCTCATTTTGATGCATGTAGCTAACCAGTCAGTGAAGTTTACAGTGCGCAGTATCCTGATTTCGTGAAGTAAGAGAGGTGTAATGTCGTCTAATATTAATGTTTATATCGAGGAGGTCTTGAGCAAAGCCCCCCCTCCAGGTTCTTCAACTATAGCAGATGACAGCAGTCAGAATAACCCAGGGGGACTGAAGGAGCACGATTACATCGGTCTGTCGGAAGTTTCCTCGTCGATAGAGAGCTCTGTGGTCTCTTGTGATGGTGAAGAGAACAATATGAACCTCAAGGAAACTGAGTTGAGATTGGGCCTTCCTGGTTCACTTTCTCCTGCAAGGGACTCATCTGAGCTGAATTTGTTAAGCCCCCTGAACATTAGGACAGAAGTGGAAGAGAAGAATCTGTTCCCTGTTGAGAAACAACAACATTCAACGAAGGATGGGGTGGCAGAAGAGAAGAATGGGCAAGACAAGTATAATATTCAGCCATCTGGAATGGGAAGGAACATGATGACTGTATCACCCAAGAATATTGTAACTGGTTCAAAGAGAGGCTTTTCAGAAGCGATGGAGTCGAGGAACTGTTTCCCGGATTCTAGAAATAATGGATTTTCAGCAGAGGGTAAGTGGGTGTTTCCTGCACAGGTTGGAGGAGTTATTGTGGCTGGATCCGAGGTTGAATTGCCCAAGACAACCACACAAGGAAAGTTTTTGCCGCAAGGACTAGCATCTGCTCCGGGAGCTTCTACCATGATGCAAGGGCCTACATCCTGGCATACAGGGGGCCTGGATCACTCAGGGAGCTCTTTCATGTCTTCTAGGAGTTCCAATGGAACAAACCTCAATGGAAAATCCATCAAGGATGGAGCTGCTTCAACTGGTGTCAAAGATATTGCACAGTCTAAGATGCCGCAGGAGAGGTCTCGTACTGAATCACAGCATGGGACTAATCAAAAACAAGTGCCTTCTGCTAACAACCCTGGAATGGCTCCTGCTGCCAAGGCTCAGGTGGTAGGTTGGCCACCAATTCGTTCTTTCAGGAAGAACAGTTTGGCTGCTCCAAAATCAAAGGATGAGGATGATGTAAAGTCTGGATCAAGTGCTTTGTACGTTAAAGTCAGCATGGATGGGGCTCCTTATCTGCGGAAGATAGACTTGAAATTATACAGCTGTTACCTTGAATTATCGTCTGCATTAGAGAAGATGTTCAGCTGCTTTACCATCGGTCAGTGTGGATCTCACGGAGTACCAGGCAGGGATGGTTTGAGTGAGAGCAAATTGATGGATCTCCTGCATGGCTCAGAATATGTGCTTACATATGAGGACAGGGATGGAGATTGGATGCTTGTTGGAGACGTTCCATGGGAGATGTTCACCGACTCTTGCAAGAGGTTACGTATCATGAAGGGTTCTGAAGCAATTGGCCTAGCTCCCAGGGCCATGGAGAAATGTAAAAACAGGAACTAGATGTGTAGCATGACCTGCTCCCAAGACACTGTGGGGGTTGACATAGGTCCAGATGGAGGGACGTGGAGTAGCCAGCGAATGAAGTAGATTATGTTTCTTTTTTCGTTCTTAGACTTTCTTATTTGCCTTGGGCATCAAGGCTTGTCCAGCCAGTCAGCAACAATGTTGCTCAGCTTATCATACATCTTCTTAAGTGGGCTTGGAAATTCATTGTTGGTACTAAGTCTTTGGTGGACTGAAGGAAGAGGGACTTGGATTTTGTGACATTGGTATGCACAGGTCAAGAAGCAGGTCATGTATATCTGGAAGGAAATTAACAGGGAGATAATTAAAATTAGAACAGTGTCTGTTGTGTTGTTTTATTAGGAGTTGAAATGCTTGGGACCAAAAATAGGCTTATGGTTTGGTGAGACATTATGTAGACTGAAATCTATCACTGAAAATCTCTGGAGCATATAGATCTAGCTCTTTCAGCGAGGGAAATGGACTTAGTGAAGGTCAGAATCATCAAAATTCCAGTTGAGCAATTCAGGAGCTATTTACTTTTGAAATCTGGAGGGATGAAGTGTAAAATCCTTTTTAAGATTACGAGAGAGACATTTGCTCTCGATGTCTTTGCAGTGCTTATATTGGCTACTTTAGTATTATGGTTTGGGATGAATCTATTTTCATCCACCAAACGGCATCTGTCCTGTTTTGTGGAACTTGTTGCTACATTGCCGTTTAGGCTGGGTGAACTCTAAAGACTTTGGTAGTTTTATTTGACTGAACTATGAGTTTGATAAAACTCAATATGTCAATATGCAGCTTGAAGTGTGACTTTATATATTATTGTATAGCTTTCAATGTTTCTATATAACCAATGCTGGTTTTTCTGANAAN

Ace file of the UniGene sp_v1.1_unigene26586

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ARF domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIM5_MALDO	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	auxin-responsive protein	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AUX/IAA protein	IPR003311	-	0.0	72%
Blast2go	Aux/IAA-ARF-dimerisation	IPR011525	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKF9

Fln msg:

Fln protein: MSSNINVYIEEVLSKAPPPGSSTIADDSSQNNPGGLKEHDYIGLSEVSSSIESSVVSCDGEENNMNLKETELRLGLPGSLSPARDSSELNLLSPLNIRTEVEEKNLFPVEKQQHSTKDGVAEEKNGQDKYNIQPSGMGRNMMTVSPKNIVTGSKRGFSEAMESRNCFPDSRNNGFSAEGKWVFPAQVGGVIVAGSEVELPKTTTQGKFLPQGLASAPGASTMMQGPTSWHTGGLDHSGSSFMSSRSSNGTNLNGKSIKDGAASTGVKDIAQSKMPQERSRTESQHGTNQKQVPSANNPGMAPAAKAQVVGWPPIRSFRKNSLAAPKSKDEDDVKSGSSALYVKVSMDGAPYLRKIDLKLYSCYLELSSALEKMFSCFTIGQCGSHGVPGRDGLSESKLMDLLHGSEYVLTYEDRDGDWMLVGDVPWEMFTDSCKRLRIMKGSEAIGLAPRAMEKCKNRN*

Protein Length: 461

Fln nts: ATGGGAAAAATGCCATTCAGCGAAGCCGATGCAGAGCGAGCTGTGCCGGATGCATGTGGGATTCTGATGTATTGGGTGAGGAACTTGGAAGGAAAAAAAAAAAGACAGTCCTCGGGATTTACTGTAGCGGTGGCTATGGAGGGGCCCTAGTAATAATATTGTTGCTGATACAGTTGGTTGGTGGTTATGCATAAGGCCCGACTCCTCCCCTTGCTTGGTATTCTTTTACTTGATATATTTGTTGGGTATCGAGGATTATTGTTTCTGGTCCAGTTAGTGGGTTTATTGCTGAGTTTGTGGAGATAATCAATCGAGTGTTCTGTCTGATACAGGCGAAGAAGAAGCTTATCAGAACAAACAAAAGAAGATTTTTTGTTTTTAATTCTTTTTCCTTACCAAGGGAAAAGTAAGCAGCAGTGTGGAAGGATTGATTTTGTTGCCCTTTTTTATGTTTTGGTTTGTTGTTCTGTGATAACCCAAGTACGATTCGAGGATAACAGCGAACGAGACTACTGAATATTGGCATTGCTTTGGAGATTCTCATTTTGATGCATGTAGCTAACCAGTCAGTGAAGTTTACAGTGCGCAGTATCCTGATTTCGTGAAGTAAGAGAGGTGTA_-_ATGTCGTCTAATATTAATGTTTATATCGAGGAGGTCTTGAGCAAAGCCCCCCCTCCAGGTTCTTCAACTATAGCAGATGACAGCAGTCAGAATAACCCAGGGGGACTGAAGGAGCACGATTACATCGGTCTGTCGGAAGTTTCCTCGTCGATAGAGAGCTCTGTGGTCTCTTGTGATGGTGAAGAGAACAATATGAACCTCAAGGAAACTGAGTTGAGATTGGGCCTTCCTGGTTCACTTTCTCCTGCAAGGGACTCATCTGAGCTGAATTTGTTAAGCCCCCTGAACATTAGGACAGAAGTGGAAGAGAAGAATCTGTTCCCTGTTGAGAAACAACAACATTCAACGAAGGATGGGGTGGCAGAAGAGAAGAATGGGCAAGACAAGTATAATATTCAGCCATCTGGAATGGGAAGGAACATGATGACTGTATCACCCAAGAATATTGTAACTGGTTCAAAGAGAGGCTTTTCAGAAGCGATGGAGTCGAGGAACTGTTTCCCGGATTCTAGAAATAATGGATTTTCAGCAGAGGGTAAGTGGGTGTTTCCTGCACAGGTTGGAGGAGTTATTGTGGCTGGATCCGAGGTTGAATTGCCCAAGACAACCACACAAGGAAAGTTTTTGCCGCAAGGACTAGCATCTGCTCCGGGAGCTTCTACCATGATGCAAGGGCCTACATCCTGGCATACAGGGGGCCTGGATCACTCAGGGAGCTCTTTCATGTCTTCTAGGAGTTCCAATGGAACAAACCTCAATGGAAAATCCATCAAGGATGGAGCTGCTTCAACTGGTGTCAAAGATATTGCACAGTCTAAGATGCCGCAGGAGAGGTCTCGTACTGAATCACAGCATGGGACTAATCAAAAACAAGTGCCTTCTGCTAACAACCCTGGAATGGCTCCTGCTGCCAAGGCTCAGGTGGTAGGTTGGCCACCAATTCGTTCTTTCAGGAAGAACAGTTTGGCTGCTCCAAAATCAAAGGATGAGGATGATGTAAAGTCTGGATCAAGTGCTTTGTACGTTAAAGTCAGCATGGATGGGGCTCCTTATCTGCGGAAGATAGACTTGAAATTATACAGCTGTTACCTTGAATTATCGTCTGCATTAGAGAAGATGTTCAGCTGCTTTACCATCGGTCAGTGTGGATCTCACGGAGTACCAGGCAGGGATGGTTTGAGTGAGAGCAAATTGATGGATCTCCTGCATGGCTCAGAATATGTGCTTACATATGAGGACAGGGATGGAGATTGGATGCTTGTTGGAGACGTTCCATGGGAGATGTTCACCGACTCTTGCAAGAGGTTACGTATCATGAAGGGTTCTGAAGCAATTGGCCTAGCTCCCAGGGCCATGGAGAAATGTAAAAACAGGAACTAG___ATGTGTAGCATGACCTGCTCCCAAGACACTGTGGGGGTTGACATAGGTCCAGATGGAGGGACGTGGAGTAGCCAGCGAATGAAGTAGATTATGTTTCTTTTTTCGTTCTTAGACTTTCTTATTTGCCTTGGGCATCAAGGCTTGTCCAGCCAGTCAGCAACAATGTTGCTCAGCTTATCATACATCTTCTTAAGTGGGCTTGGAAATTCATTGTTGGTACTAAGTCTTTGGTGGACTGAAGGAAGAGGGACTTGGATTTTGTGACATTGGTATGCACAGGTCAAGAAGCAGGTCATGTATATCTGGAAGGAAATTAACAGGGAGATAATTAAAATTAGAACAGTGTCTGTTGTGTTGTTTTATTAGGAGTTGAAATGCTTGGGACCAAAAATAGGCTTATGGTTTGGTGAGACATTATGTAGACTGAAATCTATCACTGAAAATCTCTGGAGCATATAGATCTAGCTCTTTCAGCGAGGGAAATGGACTTAGTGAAGGTCAGAATCATCAAAATTCCAGTTGAGCAATTCAGGAGCTATTTACTTTTGAAATCTGGAGGGATGAAGTGTAAAATCCTTTTTAAGATTACGAGAGAGACATTTGCTCTCGATGTCTTTGCAGTGCTTATATTGGCTACTTTAGTATTATGGTTTGGGATGAATCTATTTTCATCCACCAAACGGCATCTGTCCTGTTTTGTGGAACTTGTTGCTACATTGCCGTTTAGGCTGGGTGAACTCTAAAGACTTTGGTAGTTTTATTTGACTGAACTATGAGTTTGATAAAACTCAATATGTCAATATGCAGCTTGAAGTGTGACTTTATATATTATTGTATAGCTTTCAATGTTTCTATATAACCAATGCTGGTTTTTCTGAaAAc

Fln Alignment:

sp_v1.1_unigene26586___MSSNINVYIEEVLSKAPPPGSSTIADDSSQNNPGGLKEHDYIGLXXXXXXXXXXXXXC-DGEENNMNLKETELRLGLPGSLSPARDSSELNLLSPLNIRTEVEEKNLFPVEKQQHSTKDGVAEEKNGQDKYNIQPSGMGRNMMTVSPKNIVTGSKRGFSEAMESRNCFPDSRNNGFSAEGKWVFPAQVGGVIVAGSEVELPKTTTQGKFLPQGLASAPGASTMMQGPTSWHTGGLDHXXXXXXXXXXXNGTNLNGKSIKDGAASTGVKDIAQSKMPQERSRTESQHGTNQKQVPSANNPGMAPAAKAQVVGWPPIRSFRKNSLAA-PKSKDEDDVKSGSSALYVKVSMDGAPYLRKIDLKLYSCYLELSSALEKMFSCFTIGQCGSHGVPGRDGLSESKLMDLLHGSEYVLTYEDRDGDWMLVGDVPWEMFTDSCKRLRIMKGSEAIGLAPRAMEKCKNRN
B8LKF9_______________MSSNINAYMEEGLSKVSPPASSSISENDSQNSSVDLKAHDYIGLSEVSSSMESSVVSSQDGEENNMNLKETELRLGLPGSLSPARDSSELSLLSPLNIRTEVEEKKLFPVEKQQHSTKDGVAEEKNGQDKYNIQPSGMGRNMMTVSPKTIVTGAKRGFSEAMESRNCFPDARSNGFSAEGKWVFPTQVGGVIVAGSEVELPKTNTPGKFLPQGLASAPGTSTIMQGPTSWHTGGLDHSGSSFMSSRTPNGTNLNGKSVKDGAASTGVKDITQSKMPQERPRTESQHGTNHNQIPSANNPGMAPAAKAQVVGWPPIRSFRKNSLAAYPKTNDEDDGKSGSSALYVKVSMDGAPYLRKVDLKLYNCYLDLSSALEKMFSCFTIGQCGSHGVPGRDGLSESKLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKGSEAIGLAPRAMEKCKNRN

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
369	50			50	1.0
413	90	10			0.90298
415		90		10	0.90298
416	90	10			0.90298
420	10			90	0.90298
421		10	90		0.90298
422		10	90		0.90298
423	90			10	0.90298
424	75	18		6	1.0
426			81	18	1.0
427	75	25			1.0
428			18	81	1.0
432		25		75	1.0
433		11		88	0.999937
435	5		11	83	0.999887
437		11	5	83	0.999887
2558	11		88		0.923564
2878	75			25	0.996473
2879	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain