SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26566

Length: 1182 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene26566 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nodulation receptor kinase precursor, putative (EC:2.7.11.25)	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	receptor protein kinase	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	77%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	77%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	77%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	77%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	77%
Blast2go	Protein kinase-like domain	IPR011009	-	77%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: your sequence is shorter than subject: 324 - 431

Fln protein: IGFGGYGPVYYGITKDGVEVAVKVLSTDFHQGKREFLNEVSLMSRIHHRNLVSLFGYCQDQGTNILVYEYMHNGTLREHLHGPASQEKHLDWITRLKIAEDAAKGIEYLHAGCNPNIIHRDLKSSNILLDKEMRAKVSDFGLSRMAAEGTTHVSSLVRGTVGYLDPEYYVSQQFTEKSDVYSFGVVLLEMISGREAISDEGFGVNFRNIVQWARFHIDKGDIHSIIDPALGTNFNIQSVWKIAEKAMLCVQPYGKLRPTMSDVVKEIQEAINIENEYESADEELFETMSSQSRHSSIIPNHLDSAASDLSVTLDDSFFLPGVR*

Protein Length: 325

Fln nts: GATTGGATTCGGTGGCTATGGACCTGTGTACTATGGAATAACAAAAGATGGTGTGGAAGTTGCAGTTAAGGTTTTGTCAACCGATTTTCATCAAGGCAAACGAGAGTTTTTGAATGAAGTATCTCTGATGTCGAGAATACACCATCGGAACCTCGTTTCTTTATTTGGATACTGCCAAGATCAAGGGACAAATATTCTTGTCTATGAATACATGCATAATGGAACTTTGCGAGAGCATCTCCATGGTCCTGCCAGTCAAGAAAAACATTTGGATTGGATCACTCGTCTCAAAATTGCTGAAGATGCGGCTAAAGGCATTGAATATCTTCATGCGGGATGCAATCCAAACATCATACACAGGGATTTGAAGAGCAGCAATATCCTCCTTGATAAGGAAATGAGGGCAAAAGTTTCTGATTTTGGGCTTTCAAGAATGGCAGCAGAAGGAACAACTCATGTATCAAGCTTAGTTCGTGGAACTGTTGGCTACTTGGATCCTGAGTACTATGTCTCTCAGCAGTTCACTGAAAAGAGTGATGTTTATAGTTTTGGAGTTGTCCTCCTGGAAATGATATCTGGTCGAGAAGCTATCTCTGATGAAGGTTTTGGTGTTAATTTCCGGAACATCGTGCAATGGGCAAGATTCCATATTGATAAAGGCGATATTCACAGTATCATAGATCCAGCTTTGGGAACTAATTTCAATATCCAGTCCGTGTGGAAAATTGCGGAGAAAGCTATGCTTTGTGTCCAACCATATGGAAAACTGCGACCAACAATGTCAGATGTGGTAAAGGAGATTCAAGAGGCAATCAACATTGAGAATGAATATGAATCCGCGGACGAAGAACTTTTTGAGACGATGTCAAGTCAGTCAAGACACTCATCAATTATCCCAAATCATCTTGATTCTGCTGCGTCTGATCTATCTGTCACTCTGGATGATTCATTTTTTCTTCCGGGTGTTAGATAG___TTGTTATTAGACTTAGAAGAGGACATCTTGCATTACTAGATCAAAAAGAAACTGGATGCCTGTCGTGTTCTTCTATTGGGTTTGTCTGGATTTTCAACTTTGTACATTTTGTCAGTCAAAGTATCCTTCATTCAGCTTTCTTTGATGTAAACTTCTTCAAACTAAGCACTTTGGATCACAGTTTAATGCTTATGTGCATGGATTATTAG

Fln Alignment:

sp_v1.1_unigene26566___IGFGGYGPVYYGITKD----------GVEVAVKVLSTDFHQGKREFLNEVSLMSRIHHRNLVSLFGYCQDQGTNILVYEYMHNGTLREHLHGPASQEKHLDWITRLKIAEDAAKGIEYLHAGCNPNIIHRDLKSSNILLDKEMRAKVSDFGLSRMAAEG-TTHVSSLVRGTVGYLDPEYYVSQQFTEKSDVYSFGVVLLEMISGREAISDEGFGVNFRNIVQWAR-FHIDKGDIHSIIDPALGTNFNIQSVWKIAEKAMLCVQPYGKLRPTMSDVVKEIQEAINIENEYESADEELFETMSSQSRHSS
B8LKY1_______________LGGGGFGYVFKGWIEENGTAAVKPGTGLTVAVKTLNPDGLQGHKEWLAEVNFLGQLRHANLVKLIGYCIEDNQRLLVYEYMPRGSLENHLFRKGALP--LPWSTRMKIALGAAKGLEFLHGGAEKAVIYRDFKTSNILLDSEYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSI-DKHRSNGEQNLVEWARPYLVDKRKLYRLVDPRLSGHYSIKGAQKVAQLAHYCLSRDPKARPTMNDVVEVLTPLLSLKDTASSS----FNYQALQSQHQS

SNPs (tot: 4)

Position	A %	C %	T %	Probability
306		25	75	0.996473
532	88	11		0.923564
533	88	11		0.923564
534		11	88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain