SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26559

Length: 1297 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26559

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Acyl carrier protein n=3 Tax=Picea sitchensis RepID=A9NK69_PICSI	-	-	96%
FL-Next	sp=Acyl carrier protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	acyl carrier protein	-	-	78%

Source	InterPros	Term	Type	Identity
Blast2go	Acyl carrier protein (ACP)	IPR003231	-	78%
Blast2go	Phosphopantetheine attachment site	IPR006162	-	78%
Blast2go	Phosphopantetheine-binding	IPR006163	-	78%
Blast2go	Acyl carrier protein-like	IPR009081	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK69

Fln msg:

Fln protein: MAFASASFSVVRVAAAPSWKQKQVVPRFSGLKAVSFGQQRFDFPSFQSSQCTSGALKVVCAAKPETLNKVCDIVKSQLALSDDKPLTPESKFSDLGADSLDTVEIVMALEEEFKITVEEENAGNITTVQEAADLIERLAGVEGSAAEAVKS*

Protein Length: 153

Fln nts: CGGTTAGATTCGAACCCTTGCCGAGTAACCGCGACCTTTGAAAGCGTGACAGAAGCGACCTTTGACAGCGTGACAGAAGCACAATCCTTGGGTTTGAATATCCCACCTACACAGGTTTAGTGGCGGCCACTAAACAGAACTTTTCCTTTGCTCGTATGTGATAAAATATCCGCTGCTAATCCAGCGGAATCACCTACCCCTTAACCTACCTCTTAAATTATGACAATTCGGATTTGAAAGATTTATCCAAATGAGCAGAATATATCGGTAATAACAATGAGCTCGTCAACATGCACTTAATGGCCATGCCATATAAATGAGCCCTGTATTTGTCATTTCTTTCAGGAAGCAATTCGGGCGCTGCGTTTAAAAACCCTTTTCTGGTTTTCATTCTCCAAGATTTCGGCAGCA_-_ATGGCTTTCGCTTCAGCGAGCTTTTCTGTGGTTCGGGTCGCAGCAGCGCCATCATGGAAACAAAAACAGGTTGTCCCTAGATTCTCTGGACTAAAGGCAGTATCATTTGGACAACAAAGATTTGATTTTCCATCATTTCAATCTTCACAATGCACTTCCGGTGCTTTGAAAGTAGTTTGTGCGGCCAAGCCAGAGACTCTCAACAAAGTATGTGATATTGTGAAGAGTCAGTTAGCATTATCAGATGATAAGCCTTTGACTCCTGAATCCAAATTTTCTGATCTGGGTGCTGATTCTCTTGATACGGTAGAGATAGTAATGGCTCTTGAGGAGGAATTCAAAATCACTGTCGAAGAAGAAAATGCTGGGAACATTACAACTGTTCAGGAAGCAGCCGATTTGATAGAAAGGCTTGCCGGGGTGGAAGGTTCTGCAGCTGAGGCAGTTAAATCTTGA___GCGGTGTATGCGTGTTACCTAAAGGCTATCCAAGTGCACATCTAACGTCATCTGTTAGTCATTGTGGCTTTTTTTCTGGATCCGGTGCACAATGTGTTGGCTCATCCCTGAAGAATAATCCATCGTCTCTTTGAACCTATTGATGCTTAAGAACATTTCAACTGTCTAGTTAATTGATAGTTTTATTTCCCCACGTGGGTTAGCTTATTTTTGTTAATCACTTTTTTCAAAGGCAATAATGAAGTGAAATTTACTACTTAAATCTGATGGCAATTATATCGTGTTTACTGTTGAGTTGTGATCAATCATTTTTTAATCGGGAATTGTAGTATTAATTATGTTGAAATAACTTTCTATGGAAAGTGAGTACCTTTCTAAGGCCCCGGTTTGGTCTTTTGGTGTGGACTCATATTCACAACTACAAAGGACT

Fln Alignment:

sp_v1.1_unigene26559___WKQKQVVPRFSGLKAVSFGQQRFDFPSFQSSQCTSGALKVVCAAKPETLNKVCDIVKSQLALSDDKPLTPESKFSDLGADSLDTVEIVMALEEEFKITVEEENAGNITTVQEAADLIERLAGVEGSAAEAVKS
A9NK69_______________WNQKQVVPRFSGLKAVSFGQQRFDFPSFQSSQCTSGALKVVCAAKPETLSKVCDIVKSQLALSDDKPLTPESKFSDLGADSLDTVEIVMALEEEFKISVEEENAGNITTVQEAADLIERLAGVEGSAGQAVKS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
942	21			78	1.0
1126	5	25		60	1.0
1127		21		78	1.0
1129	85		14		0.993533
1156	20	80			0.995493
1157	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain