SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26554

Length: 1590 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26554

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyketide_cyc2 domain containing protein	-	-	3.0e-13	23%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	pyl8_arath ame: full=abscisic acid receptor pyl8 ame: full=abi1-binding protein 1 ame: full=pyr1-like protein 8 ame: full=regulatory components of aba receptor 3	-	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	response to stress	GO:0006950	Biological Process	86%
Blast2go	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	86%
Blast2go	receptor activity	GO:0004872	Molecular Function	86%
Blast2go	protein binding	GO:0005515	Molecular Function	86%
Blast2go	cytoplasm	GO:0005737	Cellular Component	86%
Blast2go	nucleus	GO:0005634	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Polyketide cyclase/dehydrase	IPR019587	-	0.0	86%
Blast2go	START-like domain	IPR023393	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSZ1

Fln msg:

Fln protein: MEDLNSWREGRGLWIGNPSSEAELVCRHHRHELQGNQCSSFLVKHIRAPVHLVWSIVRTFDQPQKYKPFVHSCSVRGGVTVGSIRNVNVKSGLPATASTERLEILDDNEHVFSIKILGGDHRLQNYSSIITVHPEIIDGRPGTLVIESYVVDVPEGNTREETRFFVEALVKCNLKSLADVSERLASQHHTELLERT*

Protein Length: 198

Fln nts: ATGGGGAAGGCGCCCATTGCCAAAAAGTGAGGAGTAGCAGGAGGAGATGAATGGATGATTGACTGACGGGCCTGTCTTTCAGACAATCAATCAATTCAATCTGTGTGCCTGAAAGTGTGGTGTCTGAATAAGAGGGGCCTCTTAAAATCAAATAAAACTGCAAATTATGAACATTACCATCTGTGCCTGAGAGTGTTCCGCTGCTATATGTATCTGGTTGTTGGATCTGGGATTTAAAATTGTTCAGACACTGGTTCTGTTCTTATCTTGGTCTTCTGAGTACTTGTGCTGAGTAGTGGTACAGAGTGGGATTGAAAGTTTTGTTTAGGG_-_ATGGAGGATTTAAACAGCTGGAGAGAGGGTAGAGGCCTGTGGATTGGAAACCCTTCATCTGAGGCAGAATTGGTGTGTAGACACCACAGACATGAGTTACAGGGGAATCAGTGCAGCTCCTTCCTTGTGAAGCACATCAGAGCCCCTGTACATCTGGTTTGGTCGATAGTGAGAACATTTGACCAACCCCAGAAGTACAAACCCTTTGTTCATAGCTGCAGTGTGAGGGGCGGTGTTACAGTAGGAAGCATCAGAAATGTTAATGTCAAATCTGGCCTGCCAGCTACAGCAAGCACAGAAAGATTAGAAATACTGGATGACAATGAGCATGTTTTCAGTATTAAAATTCTTGGAGGTGATCATCGTCTACAGAATTATTCGTCCATCATAACTGTTCACCCAGAGATCATTGATGGAAGGCCAGGTACATTGGTTATAGAATCTTACGTCGTAGATGTCCCAGAAGGAAACACAAGGGAAGAAACTCGCTTCTTTGTTGAAGCCCTAGTTAAATGCAATTTGAAGTCTCTTGCTGATGTCTCAGAGAGACTAGCCTCACAACACCACACAGAACTTCTTGAGAGAACATAA___ACTACAAAGCCTATTTCAGAGATCATATACTCTGATTATCTTGTAAGAGATTTTCCACAAAATGGAAAGCGCCTATCACTTTAGTTCCCTAGGTTTAGGATGTTTTTTGAGGTCAAACTTTGAAGTCAGCGAATCCATGTTTCTCTAGTTCTCACTACTTATTCCATTCGAAACAATATTGTTACTGATAATAAGAATTTTGTGGGCCTCAAAGAATGGTGGTTGTTTCCCCAAAGCATTCTCGCATGTAGATTTGCTGACACAGACTATACTGAGATAGGTGACCATATCTCACATAGTTAGCCATTTCAAACTGCTCCTACCTGAGGAAAACTTGTGTGTAATATTTTGTCTCGGGACTCATTCTCCTGTGTGTGTATCTCATGTTGATCAATGTTCATAAACTGTAATCTAGATGTTTGAGAGTTCAAAACATTTATGCTGTGACTTGACCGTGCTTGTAGGCTTTTCATTTGTTGCTTTCTAGAAGCTACAATCATAAGATGTGAAGTTTTGCTTGGTTCATACTGGTGGAGCTCCATCTGATAGCAGATAGAAGATTCATGGCTCTTATATTGTTGTTTCATATGTATATTGAATCTTGATTGAAAAAATTGGAAAAGATGAATGCATGTGCATTTATCCCTACTTTTGTGAATCTATTATGTA

Fln Alignment:

sp_v1.1_unigene26554___MEDLNSWREGRGLWIGNPSSEAELVCRHHRHELQGNQCSSFLVKHIRAPVHLVWSIVRTFDQPQKYKPFVHSCSVRGGVTVGSIRNVNVKSGLPATASTERLEILDDNEHVFSIKILGGDHRLQNYSSIITVHPEIIDGRPGTLVIESYVVDVPEGNTREETRFFVEALVKCNLKSLADVSERLASQ
A9NSZ1_______________MEDLSSWREGRAMWLGNPPSESELVCRHHRHELQGNQCSSFLVKHIRAPVHLVWSIVRTFDQPQKYKPFVHSCSVRGGITVGSIRNVNVKSGLPATASEERLEILDDNEHVFSIKILGGDHRLQNYSSIITVHPEIIDGRPGTLVIESYVVDVPEGNTREETRFFVEALVKCNLKSLADVSERLASQ

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
279	88		11		0.923564
288	11		88		0.923564
291		11	88		0.923564
293		11	88		0.923564
296		11	88		0.923564
298	11		88		0.923564
300		11		88	0.923564
947		33		66	0.997452
972		12		87	0.992554
974			12	87	0.992554
981	87			12	0.992554
982	87	12			0.992554
1345	86		13		0.999973
1355		81		18	0.999994
1356	77			22	0.999999
1358			22	77	0.999999
1359	20			80	0.999996
1362			80	20	0.999996
1365	20		80		0.999996
1366	20			80	0.999996
1374	20	80			0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain