SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26541

Length: 1198 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26541

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	methyl indole-3-acetate methyltransferase (EC:3.1.1.1)	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	alpha beta fold family expressed	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	indoleacetic acid conjugate metabolic process	GO:0033473	Biological Process	72%
Blast2go	shoot development	GO:0048367	Biological Process	72%
Blast2go	methyl indole-3-acetate esterase activity	GO:0080030	Molecular Function	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKW1

Fln msg:

Fln protein: MENVCQDHQYGKFHFVLIHGAGHGAWCWYKLIHLLRKSGHKVTAMDLTGSGLSTVDPDSVTSFEDYDMPLMKILSEIPYSQKVVLVGHSAGGLSLSHAIHVFGHKIAVAVYIAATMLSHGFCTEQDVQQGFPDLLKVSEFYHGLGSEQPPTSAMIHRELQQEILYQLSPPEDAALASLLIRPTPLLALQGAKFIATSEEFMKVPRVYIKTLQDRLVSLDQQEDMIKMWPPDKVLNIDSDHSPFFSSPLELHRNLLYIAQLFAG*

Protein Length: 265

Fln nts: GGTATCAACGCAGAGTACATGGGGATCAGCATCACCAAAATCAAGGAGGAGGAGCTTCGTGGCA_-_ATGGAAAATGTTTGCCAGGACCATCAATATGGCAAGTTCCATTTTGTGTTAATACATGGTGCAGGCCACGGAGCTTGGTGCTGGTACAAGCTCATCCATCTTCTGCGAAAGTCCGGGCACAAGGTCACTGCCATGGATCTCACAGGATCAGGGTTGAGCACTGTGGATCCTGATTCAGTCACTTCCTTTGAGGATTATGACATGCCTCTCATGAAAATACTCTCAGAGATACCTTACTCTCAGAAGGTTGTGCTGGTTGGCCATAGTGCTGGAGGTCTGAGCTTGAGCCATGCAATCCATGTGTTTGGCCATAAGATTGCAGTTGCAGTTTATATTGCTGCTACCATGCTATCTCATGGATTTTGTACTGAACAAGATGTCCAGCAGGGATTTCCTGACCTGTTGAAGGTATCTGAATTTTACCATGGCCTCGGATCAGAACAACCGCCAACAAGTGCAATGATTCACAGAGAACTGCAACAAGAAATTCTATATCAACTCAGCCCACCTGAGGATGCAGCTCTGGCATCCCTGCTGATAAGACCAACACCATTGCTGGCATTACAAGGAGCCAAATTTATTGCGACCTCGGAAGAATTTATGAAGGTTCCAAGAGTTTATATAAAGACCTTGCAGGACAGACTTGTATCATTGGATCAACAGGAGGACATGATCAAGATGTGGCCTCCTGATAAGGTCTTGAACATTGATTCTGATCACAGCCCCTTCTTTTCTTCCCCTTTGGAGCTCCACAGAAACTTGCTTTATATTGCCCAGCTGTTTGCAGGTTGA___ACATTCTCCCACAACAGTTACAGTTGATCTTCAGCAATATACTAATTGTATATACGATTGTGCTATTGATGATGTTCATGCTCGGTACATTCTGAATATGTGTCACTCTCTTGGTGGACTGCCTAGTTAATAGTTGGACAAATGTCCAGCTGGTGGGATGCATGTAGGTGAAGGATTCTCATATTTTGTTTTGTGGGTCGGGTTTTTTTGTTTGTCAGTGCCGACTACGTGATGTTACAAATTATCTTATAGACGACATAACTTTATGTTGTGATTTCGTTAATATTAATAATTTTCTATAAGTTTTATGTTAATAAAACAGGTAAATGTATTGTGAGTTCC

Fln Alignment:

sp_v1.1_unigene26541___MENVCQDHQYGKFHFVLIHGAGHGAWCWYKLIHLLRKSGHKVTAMDLTGSGLSTVDPDSVTSFEDYDMPLMKILSEIPYSQKVVLVGHSAGGLSLSHAIHVFGHKIAVAVYIAATMLSHGFCTEQDVQQGFPDLLKVSEFYHGLGSEQPPTSAMIHRELQQEILYQLSPPEDAALASLLIRPTPLLALQGAKFIATSEEFMKVPRVYIKTLQDRLVSLDQQEDMIKMWPPDKVLNIDSDHSPFFSSPLELHRNLLYIAQLFAG
A9NKW1_______________MENFCQDHQYGKFHFVLIHGAGHGAWCWYKLIHLLRNSGHKVTAMDLTGSGLNSVDPDSVTSFEDYDMPLMSILSEIPYSQKVVLVGHSAGGLSLSHAIHVFGHKIAVAVYIAATMLSHGLCTDQDIQQGVPDLLKVSEFYHGLGSEQPPTSAMIHRELQQEILYQLSPPEDAALASLLIRPTPLLALQTAKFIATSEQFMKVPRVYIKTLQDKIVSLDKQEAMIKMWPPDKVISMDTDHSPFFSSPLELHRNLLYIAQLFAG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
664		11		88	0.923564
1042		14		85	0.993533
1082		57	42		1.0
1149	60			40	1.0
1169		20		80	0.995493
1178	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain