SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26540

Length: 1934 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26540

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DnaJ protein homolog n=5 Tax=fabids RepID=DNJH_CUCSA	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	chaperone protein	-	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQA1

Fln msg:

Fln protein: MFGARAPKKSDSTRYYEILGVPKNASQDELKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKRDIYDQYGEDALKEGMGGGGGHDPFDIFQSFFGGNPFGGGSSRGTRRQRRGEDVVHPLKVSLEDLYNGTSKKLSLSRNVLCSKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHVCSDCRGTGETINEKDRCPQCKGEKVLPDKKMLEVTVEKGMQNGQRITFQGEADEAPDTVTGDIVFVVQQKEHPKFKRKGDDLFVEHTLLLTEALCGFQFILTHLDGRQLLIKSGPGEVVKPGQFKAINDEGMPVYQRPFMKGNLYIHFSVEFPDSFTPEQCKALEAVLPPRTASQLTDMELDECEETTLHDVNLEEEMRKKQSQQEAYEEDEEGSGGPRVQCAQQ*

Protein Length: 417

Fln nts: ATGGGGGAAGGCTTCGAGATACTTTCCAGAGACTTCTAGCAAGTGTGTTTCACGTCACAAGGTTAGTCTTTAATTAATTTTTGAATCCAAGGGCCATGCCACATTTGATCTGAGAAGAGGCGAGATCGTGAACGTTCATTGAAAGACTCGAATACCGTTGAGGCTGGAAGAAAGCTCTAAAGGGAAAGTTTGCCCCCTTTAGCTTCTTCAAGGAATTTGCTCTGGGGTTGTCAAATTTCTTCCCAACAATCTCAGTCCGGCTCCCTCTTGCTCGCTATTTGCAGGTTTAATTGACGGCCAAAATAGTCACGATTTGGCCTGTATCTCTGCCTGAAATTGTTGGAGGTTTCGAGGATTTGTACTGGGAAGGGGGTCGTTGGATTTTTTTCGTAAGCGAAA_-_ATGTTTGGAGCTCGTGCCCCTAAGAAAAGTGATAGCACTAGGTATTATGAAATCCTCGGAGTGCCAAAGAATGCTTCACAGGATGAATTGAAGAAAGCTTACAGAAAGGCTGCTATCAAAAACCATCCGGATAAGGGTGGAGATCCAGAAAAGTTTAAGGAACTTGCTCAGGCCTATGAGGTACTTAGTGATCCTGAGAAAAGAGACATTTATGATCAGTACGGGGAGGATGCACTCAAAGAAGGAATGGGTGGCGGCGGCGGTCATGATCCATTTGATATATTCCAGTCGTTCTTCGGTGGAAATCCTTTTGGAGGTGGTAGCAGCAGGGGAACCCGAAGGCAAAGGAGAGGCGAAGATGTTGTTCACCCCTTGAAGGTATCATTGGAAGACCTTTACAATGGAACATCAAAGAAGTTGTCACTATCTCGAAATGTTCTGTGCTCTAAATGCAAGGGGAAAGGGTCAAAGTCTGGCGCATCAATGAAATGCAGTGGGTGCCAAGGGTCTGGCATGAAGGTCTCTATTAGACATCTTGGACCTTCGATGATCCAGCAGATGCAACATGTCTGCAGTGATTGTAGGGGAACAGGTGAGACTATAAATGAAAAAGATAGATGCCCACAATGCAAGGGTGAAAAAGTCTTACCCGACAAGAAAATGCTCGAGGTCACAGTTGAGAAGGGAATGCAAAATGGTCAGAGGATCACTTTCCAAGGGGAAGCAGATGAAGCGCCCGACACAGTTACTGGTGACATTGTATTTGTGGTTCAACAAAAGGAGCATCCCAAATTCAAGAGAAAGGGGGACGATCTTTTCGTTGAGCATACTTTATTATTGACAGAGGCATTGTGCGGGTTTCAGTTTATATTGACCCATCTGGATGGTCGGCAACTGCTTATTAAATCTGGTCCCGGTGAAGTTGTTAAGCCAGGTCAGTTCAAGGCTATTAATGATGAAGGAATGCCTGTTTACCAGCGGCCATTCATGAAGGGTAATCTGTACATTCATTTCTCTGTAGAGTTCCCAGATTCTTTTACTCCTGAACAGTGCAAGGCTCTGGAAGCAGTTTTGCCTCCTCGAACTGCAAGCCAGCTAACAGACATGGAGTTAGATGAGTGCGAGGAAACAACACTCCATGATGTAAACTTGGAGGAAGAAATGAGGAAGAAACAAAGTCAACAGGAGGCTTATGAGGAAGATGAGGAAGGCTCCGGTGGGCCAAGGGTACAATGTGCTCAACAATGA___GAATAGTTGATTAAAACGTAGCTTTTTTCTAGTATTTAACTAAGAGGAATTTTCAGTTGACTGTTTGAATATTATAAACTAGATGTTGGTTTTCATTCTGTAACTTCCTGAATCAGGGTAAACAAATACGGAATGCATATATAACCGATGAAATCAAATTTTTGTGCAGAATTTATATGTCGTGCACGTTGTACCTTTAGTTTGTTGTACCTTTAGTTTGTTGTGTGCTAAATGTATAGTCTATTTGAAATATATTGCCATTTGACAAGGATATCAAGGATGTTTTC

Fln Alignment:

sp_v1.1_unigene26540___MFGARAPKKSDSTRYYEILGVPKNASQDELKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKRDIYDQYGEDALKEXXXXXXX-HDPFDIFQXXXXXXXXXXXXXXXXXXXXXX---EDVVHPLKVSLEDLYNGTSKKLSLSRNVLXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHVCSDCRGTGETINEKDRCPQCKGEKVLPDKKMLEVTVEKGMQNGQRITFQGEADEAPDTVTGDIVFVVQQKEHPKFKRKGDDLFVEHTLLLTEALCGFQFILTHLDGRQLLIKSGPGEVVKPGQFKAINDEGMPVYQRPFMKGNLYIHFSVEFPDS--FTPEQCKALEAVLPPRTASQLTDMELDECEETTLHDVNLEEEMRKK--QSQQEAYEEDEEGSGGPRVQCAQQ
C0PQA1_______________MFG-RAPKKSDNTKYYDILGVSKSATPDELKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGASHNPFDIFESFFGGSFGGSSFGGGSSRGRRQKQGEDVVHPLKVSLDDLYNGTSRKLSLSRNVICSKCKGKGSKSGASGRCIGCQGSGMKVSIRQLGPGMIQQMQHVCPDCRGSGETISDKDKCGQCKGSKVVQDKKVLEVHVEKGMQHGQRIVFQGEADEAPDTITGDIVFVLQLKDHSKFKRKGDDLYVEHTLNLTEALCGFQFPLTHLDGRQLLIKSSPGEIIKPSQYKAINDEGMPQYQRPFMKGRLYIHFNVEFPESGALSPEQCKALESILPPRPAGYMTDMELDECEETTLHDVNIEDELRRKQQQQQQEAYEEDDEPQ-GHRVQCAQQ

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
61			75	25	0.996473
63			25	75	0.996473
64			25	75	0.996473
85	85			14	0.993533
86	85		14		0.993533
87	14			85	0.993533
90	85			14	0.993533
91	85			14	0.993533
97		85		14	0.993533
100		14		85	0.993533
101			85	14	0.993533
104	14	85			0.993533
195		18		81	1.0
198		83	11	5	0.999887
199		77	11	11	0.999842
200	5	77	11	5	0.999842
202		16	5	77	1.0
205	83		16		1.0
211		11	5	77	0.999842
1248	80		20		0.995493
1464		1		98	0.947085
1805	1	5		91	0.999863
1810	4			93	0.985381
1860	82		3	3	1.0
1861		82	3	3	1.0
1862		86	10	3	1.0
1864	6			93	0.999453
1865	6			93	0.999453
1868	10			86	1.0
1869	17			82	1.0
1873	10			89	1.0
1874	6		82	10	1.0
1875	10			89	1.0
1876			93	6	0.999453
1882	88			11	1.0
1883	88			11	1.0
1886	11			88	1.0
1888	11			88	1.0
1921			90	10	0.90298
1924	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain