SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26492

Length: 1115 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26492

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lge1 multi-domain protein	-	-	1.0e-06	18%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTB8

Fln msg:

Fln protein: MEPSTKVLCLHVLVLSLFLFNTEARESRFFDKEPAYYNPAGGSNTVGYGEGYTRSGVDNAFGTGSGNGYGSYRGQENGDGYVYGDSEASRAGSASEARYGEAGSGYRPGSARAGEYYSENTGVGNDVGARYKKNSGKGAGSGYRSEAYGSGAGSDWHGPYTGYGQGGDQYDSGYAGRSESNGAYRSGYGGGYVTGSGNRNGYEAGSGIGNAEYVADNGYYKQTP*

Protein Length: 226

Fln nts: AGTGGTATCAAACGCAGAGTACATGGGGGTGCTCTCGTCTGCTCAGTAGCTAATCTAGCTCTGACTGAGCTTAATATCGAAGATAGAATCGATA_-_ATGGAGCCTAGCACTAAAGTTCTGTGCCTCCATGTGCTTGTATTGAGTCTGTTTCTCTTCAACACGGAGGCGAGGGAGAGCAGATTCTTTGACAAAGAGCCTGCTTACTACAACCCTGCTGGTGGATCAAATACTGTTGGGTACGGAGAAGGTTACACCAGGAGCGGTGTAGATAATGCTTTCGGAACCGGTTCCGGTAATGGCTACGGTTCCTACCGAGGCCAGGAAAACGGTGATGGTTATGTGTATGGCGACAGCGAGGCTTCCCGCGCTGGTTCTGCGAGCGAAGCCCGCTATGGAGAAGCCGGGAGCGGGTATCGTCCCGGGTCAGCTAGAGCTGGTGAGTACTATTCAGAAAATACGGGGGTCGGGAACGACGTGGGTGCCAGATACAAAAAGAACTCCGGTAAGGGTGCTGGCTCAGGGTACCGCAGTGAAGCTTATGGTTCCGGCGCTGGCTCCGATTGGCATGGCCCTTATACCGGCTATGGGCAAGGTGGTGATCAGTACGACTCGGGCTACGCTGGACGTTCGGAAAGCAATGGCGCGTATCGTTCAGGTTATGGTGGTGGCTATGTTACCGGTTCCGGTAACCGTAATGGCTACGAAGCGGGCTCTGGCATTGGCAACGCAGAATATGTTGCCGACAATGGTTATTATAAGCAGACTCCTTAA___ACACATATTCAGGACTTTGGTAATAAGGCCTCTTAAAGTTGTGTATATGACTATTTGGGTTTCATTTCAGTTGTACTGATAACATAGCAAGCTTTCCATGTATCTGCTTTCGGAATTTGGTATCTAGATTCCAATGCTATCAAGTGTAATCTGGTAACAGTTTATGATGTCTATGGAAAATCCATTTAATTTAGTTTGTTTTAAATGGATTAGTTTGGAGCCAATCACGACATAAATTAGATTTAAAGTCGAGTTATTTGTATAACAAAGCCCCGTTCCAGTAGCATATTCAAATTGCTATCAATTCCGATTGCAATTCCTTAATAACGCATTATACATAAATAGA

Fln Alignment:

sp_v1.1_unigene26492___MEPSTKXXXXXXXXXXXXXFNTEARESRFFDKEPAYYNPAGGSNTVGYGEGYTRSGVDNAFGTGSGNGYGSYRGQENGDGYVYGDXXXXXXXXXXXXXYGEAGSGYRPGSARAGEYYSENTGVGNDVGARYKKNSGK----GAGSGYRSEAYGSGAGSDWHXXXXXXXXXXXXXXXXXXXRSESNGAYXXXXXXXXXXXXXXXXXYEAGSGIGNAEYVADNGYYKQTP
C0PTB8_______________MAPSTKILCLAVLSFSLFLCNMEARESRFFNKEPAFDNPNGGSNTAGYGESYTTSGVDNAYGAGSGNGYGSYRGQGNGNGYVYGNSEASRSGSGSGAAYGEGGSGYRSGSAKAGEYYSENSALGDDAGAGYKESSGKGASYGAGSGYHGEAYGSGSGSDWHGSNGGYGQGSDQYASGYGGRSESNSAYRSGFGGGYVTGSGSGNSYEAGSGVGKAEYVADNGYYKETP

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
149		87	12		0.992554
159		25		75	1.0
258	75		25		1.0
291	12		87		0.992554
346		75		12	0.975346
363			25	75	1.0
389		75		25	1.0
426		33	66		1.0
451	80		20		0.995493
461			40	60	1.0
523		28		71	1.0
526		85		14	0.993533
557			33	66	1.0
735	60			40	1.0
742		87		12	0.992554
812	34		65		1.0
860	33		66		1.0
866	25	44	29		1.0
867	88	11			1.0
871	66		33		1.0
881	30		69		1.0
886		28		72	1.0
897	58		41		1.0
902	70		29		1.0
904	29			70	1.0
920	35	5			1.0
938	20		80		1.0
940		13		86	0.999973
945	80		20		1.0
964			11	88	0.923564
969			28	71	1.0
988			33	66	1.0
1006	60	40			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain