SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26487

Length: 1848 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26487

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	26S protease regulatory subunit 6B homolog n=9 Tax=core eudicotyledons RepID=PRS6B_ARATH	-	-	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	blue light signaling pathway	GO:0009785	Biological Process	96%
Blast2go	phototropism	GO:0009638	Biological Process	96%
Blast2go	metabolic process	GO:0008152	Biological Process	96%
Blast2go	ATPase activity	GO:0016887	Molecular Function	96%
Blast2go	protein binding	GO:0005515	Molecular Function	96%
Blast2go	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	96%
Blast2go	membrane	GO:0016020	Cellular Component	96%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8Q6

Fln msg: your sequence is longer than subject: 420 - 214

Fln protein: MAASAVVLSPKSVVEGPTGKIEMSMPPPHPHSHSDMDEEDLYSRLKSLQRQMEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTDFDFYK*

Protein Length: 421

Fln nts: AATGGGGAAAGAGAAAAACGTAAAACTTTTAGGCTAAAAGTCCAATGCAATTCGGCCCTCTTCCGTGCACTATAAACATCCCGGACCTTGGCTGTCACTCAATTTTATACCATTCAATTTGTTTATCTGAGGCAATTTCCTTTCGGTGAAGAAAGCCTCGGCTCTGTTCTGGTTTTTGCGAGGGAAAGGCAAGGTAAGGCGACA_-_ATGGCTGCATCGGCAGTGGTGCTAAGTCCGAAGTCGGTGGTCGAGGGTCCAACGGGCAAGATAGAGATGAGTATGCCTCCGCCCCATCCCCATTCTCATTCCGACATGGACGAAGAAGATCTGTACAGTCGATTGAAATCGTTACAGAGACAGATGGAGTTCATCGACATTCAAGAAGAATACGTGAAGGATGAGCAAAAAAATCTAAAGAGAGAACTGCTGAGAGCCCAGGAGGAGGTGAAGAGGATCCAGTCGGTGCCGCTGGTGATCGGGCAGTTCATGGAGATGGTTGACCAGAACAACGGAATAGTGGGTTCAACAACGGGATCGAACTACTATGTGAGGATTTTGAGCACAATCAACAGGGAGCTCCTGAAGCCCTCCGCCTCGGTAGCCCTCCACCGACATTCGAACGCCCTAGTGGACGTCCTCCCACCTGAGGCCGACTCCTCTATCTCACTCCTCTCCCAGTCCGAGAAACCGGACGTAACCTACAATGATATTGGGGGCTGTGACATACAGAAACAGGAGATTCGGGAAGCCGTGGAACTTCCACTCACACACCACGAGCTTTACAAGCAGATCGGGATAGACCCTCCTCGGGGTGTTCTTCTTTATGGCCCTCCAGGTACAGGGAAGACCATGCTTGCCAAGGCCGTCGCAAACCACACCACGGCTGCTTTCATTCGGGTTGTTGGCTCTGAGTTTGTTCAGAAGTATCTTGGAGAGGGGCCAAGGATGGTTCGTGATGTCTTTCGCCTTGCTAAAGAGAATGCACCTGCAATAATATTCATTGATGAGGTGGATGCAATTGCAACAGCACGGTTTGATGCTCAAACTGGAGCTGATAGGGAAGTTCAGAGGATCTTGATGGAGCTCTTAAATCAGATGGATGGTTTTGATCAGACCGTGAATGTGAAGGTGATCATGGCAACCAATAGAGCAGATACACTGGATCCCGCACTTCTGCGCCCTGGAAGACTTGATAGGAAAATCGAGTTTCCTCTTCCTGATAGGAGGCAGAAACGTCTTGTTTTCCAGGTTTGTACAGCAAAAATGAACCTCAGCGACGAGGTAGACCTTGAAGACTATGTATCTCGCCCTGATAAAATTAGTGCTGCAGAGATAACTGCAATTTGTCAAGAAGCTGGTATGCATGCAGTACGGAAAAACCGCTATGTTATTCTCCCAAAGGATTTTGAAAAGGGTTACAGAGCCAATGTTAAAAAACCAGACACAGACTTTGACTTTTACAAGTAA___TCAAACCTTTTCCGGCAACAGATATATATTTGTCAATTTCATCAATAGACATATCCTTCATGTTTTGGTAGAAGACTTGAAGGATGGTACTGTGCAGTAAAAATGAATATGGACGATGCCAATTTGTATTTTCTGAGTATTTTGTTACAGGATTAAAATTGAAATACCTTGCCGTTTATGTTTTATTCCAATGGGATATCGAGATACGTGAGGATGGAAATGCTATGTATTATTATAAAATTTACATGATTTGATCTGCTAAATATTCAGTGCATCATTTTACGTAGCTTTGGGAGGAGATAATAATTAGATGGTATCATGCAATGCTGGTTGAAACTATGTATCTCAACATATTATATATGTAATATAATGCCTTTCTCCAAG

Fln Alignment:

sp_v1.1_unigene26487___GKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTDFDFYK
D5A8Q6_______________GRPCLPRLSLTNTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTDFDFYK

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
793			96	3	0.989722
1724	6	31			1.0
1730	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain