SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26482

Length: 2271 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene26482
GGCCGGTAATGCGTGTCTTCGTAATAATTCCACTTGTTGCATTGCACAACAATCAATGGGAATCTGAACTTACATATACAAATTAACCTCTTCCTTACCAATGGGGACACCTCATCCTCTTATTTCTTCACAGTCGCACGAAATGGGGTTAAAGATTGACTATCTAGTTGCCTGCTTCATACTCCTCTATATTTCTGGTGGAAGTGGTGTTTTTGCAACAACTTTTACTCTCTTTAACAAATGCAAGCATTCGGTGTGGCCCGGAATCCAGCCCAGCGCCGGCAGACCCGTGCTTGCCAATGGTGGGTTTCGTTTAATGCCGTCACAGACCGTGTCCATCGTTCCCCCTTCGGAATGGTCGGGACGAATATGGGGTCGCCACGGTTGTTCCTTCGATAGCAATGGAAAAGGCGTTTGTGCCACCGGTGACTGCGGAGGCCAACTCCAATGCAACGGTGCCGGAGGCGCGCCACCAGCCACGCTCGCCGAGTTCACCCTGGGCACACAGGACTTCTACGATGTGAGTCTCGTGGATGGCTACAATCTTCCCATTGCCATAGCTACCCGCAAAGGCTCCGGTAAATGCACATATGCGGGGTGCATCAGTGACTTGAACCTCAACTGCCCGCCTTCACTTCAGGTGAAGAATGAGCAGGGCTGTGTCATGGCTTGTAAGAGTGCCTGCTTTGCCTTCAGCACGCCTCAGTATTGTTGTACGGGTTCCTATGGAAATCCCCAGACATGCAGACCCACTAGTTTCTCTCGTCTATTTAAGAATGCGTGTCCCAGAGCTTACAGTTATGCCTATGACGATCCGAGCAGCTTGGTTACATGCTCTGGGGCTGACTATCTTATCACCTTCTGCCCTCATGGATAGCGACGCTGCAAACGCTTTCCACTTCTGAACATTTAAGAGCAGCTATTTGGCTGTTTAAGACCTTAGTTGCTTGAAGAAAATGTAATTGTAATTTGTGATCACTCTTCATTTATAGGTAGTTGTATTTTGTGATCATTTTTCACTTTGGGCACTTGAGAGCAGCTATTTGGGCCATAAAATCATAGCTGCCATGAAAGTGTAGTTGCAATATGTAGATTTATGGCTTTTGTGCAGACAATAGGCATGGCTTAGGTTGATATTATTAGCTACTTTATATGTATTTCAGTTGTAATGAAGCCAAATTTATAGTAAGCCAAGGTGCAAGCTATACTTAAATCAAATCTTTCTTATTTTGTTGAGCCCCACTTACATCTGAATTTCTGTGGCAGTTATGGCTAACAGATCCAAGGTCCGATTCGCAGAGACTCCTGTTCAACAGAACAATCCAGAGCGGCAGAGTTCTGGTTGGAGTTCATGGCTATTTGGTGGGCGGAGATCTAAGGATAGTCCTGAAGAGAATCACAATTCTTCTGCTAAAGTTGAAGAACACCATGCAGCACATTCAAGTAAAGCTAGTGACGATGTCAAACCAGCGGCTGAAGAAGTTGAGTATGAAGGTGTAGACAAAGAGGCGGAGGATTTCATTGAAAAACAGCGGAAGAAGTTGGAGATGGAGAGGTTGATGTCCATGAAGAGGGTGGAGAGCATGCTTAACAGAGGCCTCTGACGAGACGCCATTAAAAACTGAAAGCCCTTCCTCATAGTGTATCACGTTTTATGGTATTGTTGTGTGCATAAAGTTGTTGATTTCTAGTTTAGTTGAGTAGCTGTTAATTTCTAGTCCAGCTGAGTAGCTCAGTTGGTCTAAGTTTTTTGGGAAGTTGTTGTTCCTCTGTCATGAAACGTTTAGTCTTTGGTCTTCTGTCATTGAGGAGTTTGTGGGCTTTTTAAGTCGTTAATCTTTTGTCATTGATGAGTTTGTGGGCTTTTTAAGTTGTTGATCTTTTGTCATTGAGGAGTTGTTGATCTTCTGTAAAAGAAGCCGTTGGGCTTCTGTCATGGAGGAGTTTGTGGGCTTTTTGTTGATCTTTTGTCATGAGGCGTTTGTGGGCTTTTCATGTTGTTGGTCTTCTGTTAAAAAAGCCGTTGGGCTTCTGTCAGGGAGGAGTTTGTAGGCTTTTGGAGTTGTTGGTCCTCTGTCAAAAAAACCCAAGTAATTGGTCTTGGGTTATTGAGGAATTTGGGCTTAGGTTAAGAAACATGGATTCAAGTTCAATTTTCCCAAGTCTTTAACGCTTTGTCAGGAGATGTGAGTTCGATTTTACTTCTACAGAGTTTTTTGGCCTTCTGTTACAAAGCATGGTTCAGATTCAATTCTCCTGAGTCTTTGGCCA

Ace file of the UniGene sp_v1.1_unigene26482

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	thaumatin-like protein [Arabidopsis thaliana] prf\|\|2106421A thaumatin-like protein	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	thaumatin-like protein	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Thaumatin, pathogenesis-related	IPR001938	-	0.0	78%
Blast2go	Thaumatin, conserved site	IPR017949	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYU8

Fln msg:

Fln protein: MGTPHPLISSQSHEMGLKIDYLVACFILLYISGGSGVFATTFTLFNKCKHSVWPGIQPSAGRPVLANGGFRLMPSQTVSIVPPSEWSGRIWGRHGCSFDSNGKGVCATGDCGGQLQCNGAGGAPPATLAEFTLGTQDFYDVSLVDGYNLPIAIATRKGSGKCTYAGCISDLNLNCPPSLQVKNEQGCVMACKSACFAFSTPQYCCTGSYGNPQTCRPTSFSRLFKNACPRAYSYAYDDPSSLVTCSGADYLITFCPHG*

Protein Length: 260

Fln nts: GGCCGGTAATGCGTGTCTTCGTAATAATTCCACTTGTTGCATTGCACAACAATCAATGGGAATCTGAACTTACATATACAAATTAACCTCTTCCTTACCA_-_ATGGGGACACCTCATCCTCTTATTTCTTCACAGTCGCACGAAATGGGGTTAAAGATTGACTATCTAGTTGCCTGCTTCATACTCCTCTATATTTCTGGTGGAAGTGGTGTTTTTGCAACAACTTTTACTCTCTTTAACAAATGCAAGCATTCGGTGTGGCCCGGAATCCAGCCCAGCGCCGGCAGACCCGTGCTTGCCAATGGTGGGTTTCGTTTAATGCCGTCACAGACCGTGTCCATCGTTCCCCCTTCGGAATGGTCGGGACGAATATGGGGTCGCCACGGTTGTTCCTTCGATAGCAATGGAAAAGGCGTTTGTGCCACCGGTGACTGCGGAGGCCAACTCCAATGCAACGGTGCCGGAGGCGCGCCACCAGCCACGCTCGCCGAGTTCACCCTGGGCACACAGGACTTCTACGATGTGAGTCTCGTGGATGGCTACAATCTTCCCATTGCCATAGCTACCCGCAAAGGCTCCGGTAAATGCACATATGCGGGGTGCATCAGTGACTTGAACCTCAACTGCCCGCCTTCACTTCAGGTGAAGAATGAGCAGGGCTGTGTCATGGCTTGTAAGAGTGCCTGCTTTGCCTTCAGCACGCCTCAGTATTGTTGTACGGGTTCCTATGGAAATCCCCAGACATGCAGACCCACTAGTTTCTCTCGTCTATTTAAGAATGCGTGTCCCAGAGCTTACAGTTATGCCTATGACGATCCGAGCAGCTTGGTTACATGCTCTGGGGCTGACTATCTTATCACCTTCTGCCCTCATGGATAG___CGACGCTGCAAACGCTTTCCACTTCTGAACATTTAAGAGCAGCTATTTGGCTGTTTAAGACCTTAGTTGCTTGAAGAAAATGTAATTGTAATTTGTGATCACTCTTCATTTATAGGTAGTTGTATTTTGTGATCATTTTTCACTTTGGGCACTTGAGAGCAGCTATTTGGGCCATAAAATCATAGCTGCCATGAAAGTGTAGTTGCAATATGTAGATTTATGGCTTTTGTGCAGACAATAGGCATGGCTTAGGTTGATATTATTAGCTACTTTATATGTATTTCAGTTGTAATGAAGCCAAATTTATAGTAAGCCAAGGTGCAAGCTATACTTAAATCAAATCTTTCTTATTTTGTTGAGCCCCACTTACATCTGAATTTCTGTGGCAGTTATGGCTAACAGATCCAAGGTCCGATTCGCAGAGACTCCTGTTCAACAGAACAATCCAGAGCGGCAGAGTTCTGGTTGGAGTTCATGGCTATTTGGTGGGCGGAGATCTAAGGATAGTCCTGAAGAGAATCACAATTCTTCTGCTAAAGTTGAAGAACACCATGCAGCACATTCAAGTAAAGCTAGTGACGATGTCAAACCAGCGGCTGAAGAAGTTGAGTATGAAGGTGTAGACAAAGAGGCGGAGGATTTCATTGAAAAACAGCGGAAGAAGTTGGAGATGGAGAGGTTGATGTCCATGAAGAGGGTGGAGAGCATGCTTAACAGAGGCCTCTGACGAGACGCCATTAAAAACTGAAAGCCCTTCCTCATAGTGTATCACGTTTTATGGTATTGTTGTGTGCATAAAGTTGTTGATTTCTAGTTTAGTTGAGTAGCTGTTAATTTCTAGTCCAGCTGAGTAGCTCAGTTGGTCTAAGTTTTTTGGGAAGTTGTTGTTCCTCTGTCATGAAACGTTTAGTCTTTGGTCTTCTGTCATTGAGGAGTTTGTGGGCTTTTTAAGTCGTTAATCTTTTGTCATTGATGAGTTTGTGGGCTTTTTAAGTTGTTGATCTTTTGTCATTGAGGAGTTGTTGATCTTCTGTAAAAGAAGCCGTTGGGCTTCTGTCATGGAGGAGTTTGTGGGCTTTTTGTTGATCTTTTGTCATGAGGCGTTTGTGGGCTTTTCATGTTGTTGGTCTTCTGTTAAAAAAGCCGTTGGGCTTCTGTCAGGGAGGAGTTTGTAGGCTTTTGGAGTTGTTGGTCCTCTGTCAAAAAAACCCAAGTAATTGGTCTTGGGTTATTGAGGAATTTGGGCTTAGGTTAAGAAACATGGATTCAAGTTCAATTTTCCCAAGTCTTTAACGCTTTGTCAGGAGATGTGAGTTCGATTTTACTTCTACAGAGTTTTTTGGCCTTCTGTTACAAAGCATGGTTCAGATTCAATTCTCCTGAGTCTTTGGCCA

Fln Alignment:

sp_v1.1_unigene26482___MGLKIDYLVACFILLYISGGSGVFATTFTLFNKCKHSVWPGIQPSAGRPVLANGGFRLMPSQTVSIVPPSEWSGRIWGRHGCSFDSNGKGVCATGDCGGQLQCNGAGGAPPATLAEFTLGTQDFYDVSLVDGYNLPIAIATRKGSGKCTYAGCISDLNLNCPPSLQVKNEQGCVMACKSACFAFSTPQYCCTGSYGNPQTCRPTSFSRLFKNACPRAYSYAYDDPSSLVTCSGADYLITFCPH
A9NYU8_______________MGAKFANLAAFLSLLCIAGGSGVFATTFTLFNKCKHSVWPGIQPSAGRPVLANGGFRLMPLQAMSIVPPAGWSGRIWGRHGCSFDSDGKGLCATGDCGGQLHCNGAGGAPPATLAEITLGTQDFYDVSLVDGYNLPIAIAPRRGSGKCTYAGCISDLNLSCPPSLQVKNEQGCVMACKSACFAFSTPQYCCTGSYGNPQTCRPTSFSRLFKNACPRAYSYAYDDPNSLVTCSGADYLITFCPH

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
102		33	66		1.0
103			66	33	1.0
105		33	50		1.0
214	60			40	1.0
224		20		80	0.995493
232		50	50		1.0
376		71		14	0.984337
379		14		71	0.984337
385			71	14	0.984337
628	90		10		0.999898
822	10		90		0.90298
1108			97	2	0.960269
1127	14			85	1.0
1231			4	87	0.999414
1238	9	90			0.999872
1239	14	28		57	1.0
1240	16	33	50		1.0
1402	81		18		0.999994
1591	83		16		0.994512
1729		80		20	0.995493
1785	20			80	0.995493
1862	66		33		0.997452
2118	37		62		1.0
2150		15		84	0.999986
2154	84		15		0.999986
2216	66	33			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain