SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26466

Length: 2437 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene26466
GTTGTCTGATTCTTCTGAGAGTAGGCCCTGCGTGTTCTGAGACTTTTTTGTCGTTTTAATTTCTATTGAACTTGGCTTGTCATTTGTTCATTTTCAAGTATTGATTTGATGTATAGGAGGTGACAACTTCTGTAAGTTTTTAGATGGATCAGGACCAATCCATCTGCAGATTTGCAGCTCAGAAGGGAAAAGGAGAGTTTCAGTCTTCTTCATTCCCAGACGAAGTTTTGGAACATGTTTTGGTTTTCCTGTCCTCCCAGAAGGACAGAAATTCTGTTTCCTTGGTATGCAAGGCCTGGCACAGGGTTGAGGCGTGGACGCGCCAGCAGGTGTTCATTGGCAACTGTTATGCTGTCTCCCCACAGATTATGATAAAAAGGTTTCCCAAGATCAAGTCTGTGTCACTCAAGGGGAAGCCCAGATTTGCAGATTTTAATTTGTTGCCACCAAATTGGGGGGCCCATCTCACTCCATGGGTGTCGGCCATGGCAACTGCTTATCCATTACTTGAGAGGCTGTACTTGAAGAGGATGACTATCACAGATTATGATCTCACATTGCTTGCAAATTCCTTCCTATATTTCAAGGAGCTTGTTATGGTTTGTTGTGATGGATTCAGCACAGGTGGCCTCGCTTCGATCGCAAGCAAATGCAGGCAATTGACCACACTTGATTTGAATGAGGACGAAATACATGATAATGGAGAAGATTGGCTGGCTTGCTTTCCTGAGACTTTGACGTCTCTAAGATCTCTTTGTTTTGATTGTTTGGAGGGCCCAATAAATTTTGATGCACTTGAAAGATTAGTTGCAAGATGCCCCTCTCTGAAGAAGCTCAGGCTAAATAGAAATGTTTCTATAGTGCAGTTACAAAGGTTGATAATAAAAGCACCACAGCTTACTCATCTAGGAACAGGCTCATTTTTCTATGAGTTCCAACCGGAGCAAGTAGCAGATCTTCTCGCAGCCTTCAGCAATTGTAAACAACTTCAATGTTTGTCAGGATTTCGTGAAGTTGTGCCAGAGTATCTACCTGCGGTATATCCAGTTTGCTCTAATTTAACATCTCTAAACTTCAGCTATGCTGTTATTGGCAGCAGAGAGTTGGAAGGAATAGTCTGTCACTGTCGTAAATTGCAGCTACTCTGGGTTTTGGATTCGGTGGGAGACAAAGGTTTGGAGGCAGCAGCTACAACGTGCAAGGATCTGAGGGATCTCCGTGTATTTCCCGTGGATGCACGTGAAGATGGTGAAGGTTGTGTATCTGAACGGGGCCTTGTTGCAATCTCCGAGGGGTGTCCAAATCTTGAGTCCATTCTATACTTTTGTCAGCGTATGACCAATAAAGCAGTTGTGACCATGTCGCATAACTGTTCCAAACTTGCCAGCTTTCGTCTCTGTATCATGGGTCGACACCAACCTGATCATTTAACTGGTGAACCTATGGATGAGGGATTTGGGGCAATCGTAAGAAACTGCAAAAGCCTAACAAGGTTGGCAGTATCTGGTCTACTCACTGACAAAGCATTTCAGTATTTTGGAGCCTATGGTGAAAGATTAGAGACCTTATCAGTAGCATTTGCTGGGGAAAGTGACCTCAGCATGAAGTATGTGCTCGATGGATGCAAGAACCTTCGGAAGCTTGAGATTAGAGACAGTCCATTTGGAGATGTTGCCCTCTTGTCTGGTTTACATAACTATGAAAATATGCGGTTTTTGTGGATGTCTGATTGCAGACTTACTCTACAGGGATGCACAGAGCTGGCCAAGACGTTGCCTGGACTTAATGTTGAAATAATCAGAGAAAATGAATGCAATGATTCTCTTGTTGAGAGACTTTATGCTTATCGCACTGTAGCAGGTCCACGGAAAGACATGCCGTCATTTGTAACCATCTTATAGCCACTTCACATGAATTTTGTGGTTATGGCTCTGCTACATATGGGCAACCTGTTAGGGCTATCCTACTAAATTAATCTTGCATCAATATTACTGACGAAAAAGCCCATGTCCATAATGCCTTTACTTCACCAAAGGAGGAGCAATAGAGCAGGCCAGGTTATTGCCATTTTACTTTGGAAACTTTCTTCAGGTTGTAGCTGCCTCTTGAAGGGTTGGAAGGATGTACGATTCACTGATGCAGACTGCTTATTCTTGTTGCTCCCTAAAGTCGAATCTAGTTAAAATGCCAAACAATAAACTGGTGATAGAAATGCTGAAGGTGATGAAAGGTGGAGGATTACAGATGAATCCCTTCTGCGTGCATTGGATAGTGTTTTAAGGGACTGAATGTCTCAATTGGTCTGTTTGTTTTAATTTCAAACAATTGACCCATCTTCGATGCAATCTGTGATTTGACTTGAATTCAATCTGTGATTTGACTTGAATTTTATTTGCTATATGACTGATGCGGAGCTTGTTGAGGAGGTTTGGAATTG

Ace file of the UniGene sp_v1.1_unigene26466

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TIR1/AFB auxin receptor protein PintaAFB4A n=2 Tax=Pinus taeda RepID=C9EHS9_PINTA	-	-	98%
FL-Next	tr=TIR1/AFB auxin receptor protein PintaAFB4A; Pinus taeda (Loblolly pine).	-	-	98%
Blast2go	f-box family protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C9EHS9

Fln msg:

Fln protein: MDQDQSICRFAAQKGKGEFQSSSFPDEVLEHVLVFLSSQKDRNSVSLVCKAWHRVEAWTRQQVFIGNCYAVSPQIMIKRFPKIKSVSLKGKPRFADFNLLPPNWGAHLTPWVSAMATAYPLLERLYLKRMTITDYDLTLLANSFLYFKELVMVCCDGFSTGGLASIASKCRQLTTLDLNEDEIHDNGEDWLACFPETLTSLRSLCFDCLEGPINFDALERLVARCPSLKKLRLNRNVSIVQLQRLIIKAPQLTHLGTGSFFYEFQPEQVADLLAAFSNCKQLQCLSGFREVVPEYLPAVYPVCSNLTSLNFSYAVIGSRELEGIVCHCRKLQLLWVLDSVGDKGLEAAATTCKDLRDLRVFPVDAREDGEGCVSERGLVAISEGCPNLESILYFCQRMTNKAVVTMSHNCSKLASFRLCIMGRHQPDHLTGEPMDEGFGAIVRNCKSLTRLAVSGLLTDKAFQYFGAYGERLETLSVAFAGESDLSMKYVLDGCKNLRKLEIRDSPFGDVALLSGLHNYENMRFLWMSDCRLTLQGCTELAKTLPGLNVEIIRENECNDSLVERLYAYRTVAGPRKDMPSFVTIL*

Protein Length: 587

Fln nts: GTTGTCTGATTCTTCTGAGAGTAGGCCCTGCGTGTTCTGAGACTTTTTTGTCGTTTTAATTTCTATTGAACTTGGCTTGTCATTTGTTCATTTTCAAGTATTGATTTGATGTATAGGAGGTGACAACTTCTGTAAGTTTTTAG_-_ATGGATCAGGACCAATCCATCTGCAGATTTGCAGCTCAGAAGGGAAAAGGAGAGTTTCAGTCTTCTTCATTCCCAGACGAAGTTTTGGAACATGTTTTGGTTTTCCTGTCCTCCCAGAAGGACAGAAATTCTGTTTCCTTGGTATGCAAGGCCTGGCACAGGGTTGAGGCGTGGACGCGCCAGCAGGTGTTCATTGGCAACTGTTATGCTGTCTCCCCACAGATTATGATAAAAAGGTTTCCCAAGATCAAGTCTGTGTCACTCAAGGGGAAGCCCAGATTTGCAGATTTTAATTTGTTGCCACCAAATTGGGGGGCCCATCTCACTCCATGGGTGTCGGCCATGGCAACTGCTTATCCATTACTTGAGAGGCTGTACTTGAAGAGGATGACTATCACAGATTATGATCTCACATTGCTTGCAAATTCCTTCCTATATTTCAAGGAGCTTGTTATGGTTTGTTGTGATGGATTCAGCACAGGTGGCCTCGCTTCGATCGCAAGCAAATGCAGGCAATTGACCACACTTGATTTGAATGAGGACGAAATACATGATAATGGAGAAGATTGGCTGGCTTGCTTTCCTGAGACTTTGACGTCTCTAAGATCTCTTTGTTTTGATTGTTTGGAGGGCCCAATAAATTTTGATGCACTTGAAAGATTAGTTGCAAGATGCCCCTCTCTGAAGAAGCTCAGGCTAAATAGAAATGTTTCTATAGTGCAGTTACAAAGGTTGATAATAAAAGCACCACAGCTTACTCATCTAGGAACAGGCTCATTTTTCTATGAGTTCCAACCGGAGCAAGTAGCAGATCTTCTCGCAGCCTTCAGCAATTGTAAACAACTTCAATGTTTGTCAGGATTTCGTGAAGTTGTGCCAGAGTATCTACCTGCGGTATATCCAGTTTGCTCTAATTTAACATCTCTAAACTTCAGCTATGCTGTTATTGGCAGCAGAGAGTTGGAAGGAATAGTCTGTCACTGTCGTAAATTGCAGCTACTCTGGGTTTTGGATTCGGTGGGAGACAAAGGTTTGGAGGCAGCAGCTACAACGTGCAAGGATCTGAGGGATCTCCGTGTATTTCCCGTGGATGCACGTGAAGATGGTGAAGGTTGTGTATCTGAACGGGGCCTTGTTGCAATCTCCGAGGGGTGTCCAAATCTTGAGTCCATTCTATACTTTTGTCAGCGTATGACCAATAAAGCAGTTGTGACCATGTCGCATAACTGTTCCAAACTTGCCAGCTTTCGTCTCTGTATCATGGGTCGACACCAACCTGATCATTTAACTGGTGAACCTATGGATGAGGGATTTGGGGCAATCGTAAGAAACTGCAAAAGCCTAACAAGGTTGGCAGTATCTGGTCTACTCACTGACAAAGCATTTCAGTATTTTGGAGCCTATGGTGAAAGATTAGAGACCTTATCAGTAGCATTTGCTGGGGAAAGTGACCTCAGCATGAAGTATGTGCTCGATGGATGCAAGAACCTTCGGAAGCTTGAGATTAGAGACAGTCCATTTGGAGATGTTGCCCTCTTGTCTGGTTTACATAACTATGAAAATATGCGGTTTTTGTGGATGTCTGATTGCAGACTTACTCTACAGGGATGCACAGAGCTGGCCAAGACGTTGCCTGGACTTAATGTTGAAATAATCAGAGAAAATGAATGCAATGATTCTCTTGTTGAGAGACTTTATGCTTATCGCACTGTAGCAGGTCCACGGAAAGACATGCCGTCATTTGTAACCATCTTATAG___CCACTTCACATGAATTTTGTGGTTATGGCTCTGCTACATATGGGCAACCTGTTAGGGCTATCCTACTAAATTAATCTTGCATCAATATTACTGACGAAAAAGCCCATGTCCATAATGCCTTTACTTCACCAAAGGAGGAGCAATAGAGCAGGCCAGGTTATTGCCATTTTACTTTGGAAACTTTCTTCAGGTTGTAGCTGCCTCTTGAAGGGTTGGAAGGATGTACGATTCACTGATGCAGACTGCTTATTCTTGTTGCTCCCTAAAGTCGAATCTAGTTAAAATGCCAAACAATAAACTGGTGATAGAAATGCTGAAGGTGATGAAAGGTGGAGGATTACAGATGAATCCCTTCTGCGTGCATTGGATAGTGTTTTAAGGGACTGAATGTCTCAATTGGTCTGTTTGTTTTAATTTCAAACAATTGACCCATCTTCGATGCAATCTGTGATTTGACTTGAATTCAATCTGTGATTTGACTTGAATTTTATTTGCTATATGACTGATGCGGAGCTTGTTGAGGAGGTTTGGAATTG

Fln Alignment:

sp_v1.1_unigene26466___MDQDQSICRFAAQKGKGEFQSSSFPDEVLEHVLVFLSSQKDRNSVSLVCKAWHRVEAWTRQQVFIGNCYAVSPQIMIKRFPKIKSVSLKGKPRFADFNLLPPNWGAHLTPWVSAMATAYPLLERLYLKRMTITDYDLTLLANSFLYFKELVMVCCDGFSTGGLASIASKCRQLTTLDLNEDEIHDNGEDWLACFPETLTSLRSLCFDCLEGPINFDALERLVARCPSLKKLRLNRNVSIVQLQRLIIKAPQLTHLGTGSFFYEFQPEQVADLLAAFSNCKQLQCLSGFREVVPEYLPAVYPVCSNLTSLNFSYAVIGSRELEGIVCHCRKLQLLWVLDSVGDKGLEAAATTCKDLRDLRVFPVDAREDGEGCVSERGLVAISEGCPNLESILYFCQRMTNKAVVTMSHNCSKLASFRLCIMGRHQPDHLTGEPMDEGFGAIVRNCKSLTRLAVSGLLTDKAFQYFGAYGERLETLSVAFAGESDLSMKYVLDGCKNLRKLEIRDSPFGDVALLSGLHNYENMRFLWMSDCRLTLQGCTELAKTLPGLNVEIIRENECNDSLVERLYAYRTVAGPRKDMPSFVTIL
C9EHS9_______________MDQDQSICRFAAQKGKGEIQSSSFPDEVLEHVLVFLSSQKDRNSVSLVCKAWHRVEAWTRQQVFIGNCYAVSPQIMIKRFPKIKSVSLKGKPRFADFNLVPPNWGAHLTPWVSAMATAYPLLERLYLKRMTITDYDLTLLANSFLYFKELVMVCCDGFSTGGLASIASKCRQLTTLDLNEDEIHDNGEDWLACFPETLTSLRSLCFDCLEGPVNFDALERLVARCPSLKKLRLNRNVSIVQLQRLIIKAPQLTHLGTGSFFYEFQLEQVADLLAAFSNCKQLQCLSGFREVVPEYIPAVYPVCSNLTSLNFSYAVIGSRELEGIVCHCRKLQLLWVLDSVGDKGLEAAATTCKDLRDLRVFPVDAREDGEGCVSERGLVAISEGCPNLESILYFCQRMTNKAVVTMSHNCSKLASFRLCIMGRHQPDHLTGEPMDEGFGAIVRNCKSLTRLAVSGLLTDKAFQYFGAYGERLETLSVAFAGESDLSMKYVLDGCKNLRKLEIRDSPFGDVALLSGLHHYENMRFLWMSDCRLTLQGCTELAKKMPGLNVEIIRENECNDSLVEKLYAYRTVAGPRKDMPSFVTIL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1625		85		14	0.993533
1662		14		85	0.993533
2061	90		9		0.999842
2064	9		90		0.999842
2366		85		14	0.993533
2367	85			14	0.993533
2370		85		14	0.993533
2373		14		85	0.993533
2374			85	14	0.993533
2377	14			85	0.993533
2381	16	83			0.994512
2386	80			20	0.995493
2408		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain