SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26461

Length: 917 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26461

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=Regulatory-associated protein of TOR 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	59%
Blast2go	protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	cell growth	GO:0016049	Biological Process	71%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	71%
Blast2go	protein binding	GO:0005515	Molecular Function	71%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	71%
Blast2go	Regulatory associated protein of TOR	IPR004083	-	71%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	71%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	71%
Blast2go	WD40-repeat-containing domain	IPR017986	-	71%
Blast2go	WD40 repeat, subgroup	IPR019781	-	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q93YQ1

Fln msg: Distance to subject end: 156 aas, your sequence is shorter than subject: 305 - 1344

Fln protein: PSLPGLARSYSWLDLNSGNLPITFRTPPASPPTRQSYLTGMRRVCSLEFGPHMRTAADAGLADSIIVPGGSSASERGLLPQSTIYSWSCGHYSRPLLAASDDEEALVRREERERLTLERIAKCQHSNVSRISDQIAKFPETGCEAGLKSVLLHPFIPIVIAADEKETVRIWNYDEEAQLNVFDNHDGPNRGISKLCLVNELDDSMLLVASNDGSVRVWKDYTQRDKHKLATAWQTTQGHRPGARSVNAVVDWQQLTGFLYASGEISSIMVWDLRIEQLACSIPSSTESCISALSASQVHDRQLVA

Protein Length: 306

Fln nts: TCCTAGTTTACCTGGATTGGCACGTTCATATTCTTGGTTAGATTTAAATTCAGGAAATCTACCTATTACATTTAGAACGCCTCCTGCAAGTCCCCCAACCCGACAGAGCTACTTAACTGGAATGCGTAGAGTATGCTCCTTGGAATTCGGTCCTCACATGCGCACAGCTGCAGATGCTGGTTTAGCAGACTCAATCATAGTCCCTGGTGGATCATCAGCCTCTGAAAGGGGCCTCCTTCCACAATCAACTATCTATAGTTGGAGTTGTGGCCATTACTCAAGGCCTCTGTTGGCAGCTTCTGATGATGAGGAAGCATTAGTAAGACGGGAAGAAAGAGAGAGGCTAACTCTTGAAAGAATTGCAAAATGTCAACACTCTAATGTAAGCAGAATCAGTGATCAGATTGCAAAATTTCCGGAAACAGGTTGTGAGGCTGGGCTGAAATCTGTATTGCTACATCCTTTCATTCCTATTGTTATTGCTGCTGACGAGAAGGAGACTGTAAGGATATGGAACTATGATGAAGAAGCACAGCTGAATGTTTTTGACAACCACGATGGCCCGAACAGGGGAATTTCCAAGCTCTGTCTTGTGAATGAGCTGGATGACAGCATGCTTCTTGTTGCTTCAAATGATGGGAGTGTTCGTGTTTGGAAAGATTACACTCAACGAGATAAACATAAGCTTGCAACAGCGTGGCAAACAACTCAAGGGCATAGACCTGGTGCTCGCAGTGTTAATGCTGTGGTTGACTGGCAGCAGTTGACAGGGTTTCTGTATGCATCCGGGGAGATATCCTCTATCATGGTTTGGGATCTTCGTATAGAACAACTAGCTTGCAGTATCCCATCTTCTACAGAAAGCTGCATTTCAGCCCTGTCTGCATCTCAGGTTCATGATCGACAGCTAGTTGCAG

Fln Alignment:

sp_v1.1_unigene26461___LPGLARSYSWLDLNSGNLPITFRTPPASPPTRQSYLTGMRRVCSLEFGPHMRTAADAGLADSIIVPGGSSASERGLLPQSTIYSWSCGHYSRPLLAASD-DXXXXXXXXXXXXXXXXXIAKCQHSNVSRISDQIAKFPETGCEAGLKSVLLHPFIPIVIAADEKETVRIWNYDEEAQLNVFDNHDGPNRGISKLCLVNELDDSMLLVASNDGSVRVWKDYTQRDKHKLATAWQTTQGHRPGARSVNAVVDWQQLTGFLYASGEISSIMVWDLRIEQLACSIPSSTESCISALSASQVHDRQLVA
Q93YQ1_______________LAGLARSSSWFDMHAGNLPLSFRTPPVSPP-RTNYLSGLRRVCSLEFRPHLLGSPDSGLADPLL---GASGSERSLLPLSTIYGWSCGHFSKPLLGGADASQEIAAKREEKEKFALEHIAKCQHSSISKLNNNPIANWDTRFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGFDNHDFPDKGISKLCLINELDDSLLLVASCDGSVRIWKNYATKGKQKLVTGFSSIQGHKPGARDLNAVVDWQQQSGYLYASGETSTVTLWDLEKEQLVRSVPSESECGVTALSASQVHGGQLAA

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
666	16	83			0.994512
667			16	83	0.994512
670	83		16		0.994512
671		83		16	0.994512
673	83		16		0.994512
677	83	16			0.994512
682			16	83	0.994512
683	83	16			0.994512
686	16	83			0.994512
687			16	83	0.994512
689	16		83		0.994512
693		83		16	0.994512
694	83		16		0.994512
696		83	16		0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain