SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26438

Length: 794 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26438

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2A n=1 Tax=Picea sitchensis RepID=A9NTX3_PICSI	-	-	2.94273e-44	81%
FL-Next	sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	histone h2a	-	-	5.88545e-44	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	5.88545e-44	92%
Blast2go	response to wounding	GO:0009611	Biological Process	5.88545e-44	92%
Blast2go	response to bacterium	GO:0009617	Biological Process	5.88545e-44	92%
Blast2go	nucleus	GO:0005634	Cellular Component	5.88545e-44	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Histone H2A	IPR002119	-	5.88545e-44	92%
Blast2go	Histone core	IPR007125	-	5.88545e-44	92%
Blast2go	Histone-fold	IPR009072	-	5.88545e-44	92%

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
36	20		80		0.995493
48		83	16		0.994512
50	83		16		0.994512
95		66		33	1.0
224		87	12		0.992554
506		19		80	1.0
556		80		19	1.0
584	81		18		1.0
590		78		21	1.0
628		8		91	0.999766

SSRs (tot: 1)

Start position	End position	Sequence	Length
652	666	TTTA TTTA TTTA TTT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain