SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26426

Length: 1263 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26426

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat family protein	-	-	9.0e-35	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	protein	-	-	0.0	52%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	52%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB91

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 85 aas, putative chimeric sequence, your sequence is shorter than subject: 327 - 482

Fln protein: NLQQIQLVTCQAFESLPDSFGNLTKLQQIQLSNFPALKSLPESFGNLTNLLQIKLSWCPTLERLPDSFGKLIKLQHLDLDSCTNLTMSSETLGNISTLQYINLSNCGKIEVFPPQVAHQRSLKMLYMRGTMLKELPSEIGELSDLEVLDVGPLLDTLPSSLCNLKNLKKLQLYVCKGLKCLPVLLGDLKNLKELQLHKCKELACLPPSLGQLAQLTELRVIDCPLICELPFKEVKGETLSDLDSSIRYCILPRLQLLEVAGIGISEVSFAEGVCFNLRDLTVSYCNNVEEVGTLPTTLVNLSLKLCDNLTKMIQYAIFQNFKSYNC*

Protein Length: 328

Fln nts: CAATCTCCAACAGATTCAATTGGTTACGTGTCAAGCTTTCGAGAGCCTGCCAGATTCCTTTGGCAATTTAACCAAACTCCAACAAATTCAGCTATCTAATTTCCCAGCTTTGAAGAGCCTTCCAGAATCTTTTGGTAATTTAACCAACCTCCTACAGATCAAGCTGTCCTGGTGCCCCACCTTGGAAAGGTTGCCAGATTCCTTTGGTAAACTAATTAAACTCCAACATCTTGATTTGGACTCTTGCACTAATTTAACCATGTCAAGCGAAACATTAGGAAATATAAGCACGCTTCAGTACATAAATCTCTCTAATTGCGGGAAAATTGAAGTGTTCCCTCCCCAGGTGGCACATCAGAGGTCGCTTAAAATGTTATATATGAGAGGTACAATGTTAAAAGAACTGCCAAGTGAAATTGGAGAGTTAAGTGATTTGGAAGTTCTGGATGTAGGACCTTTGCTGGACACTCTGCCGTCTTCACTATGTAATTTAAAGAACTTGAAGAAATTGCAGCTCTATGTATGTAAGGGATTGAAATGTTTGCCGGTTTTGCTGGGTGACTTAAAAAACTTGAAGGAATTGCAACTTCATAAATGCAAGGAATTAGCATGTTTGCCGCCTTCTCTTGGACAGTTGGCCCAGTTGACTGAGTTAAGGGTAATTGATTGTCCATTGATATGCGAACTGCCATTTAAGGAGGTGAAAGGAGAAACATTGAGTGATTTGGACTCTTCCATTCGCTACTGCATACTTCCACGGCTCCAACTGTTAGAGGTTGCAGGGATAGGGATATCAGAGGTGTCATTTGCTGAAGGTGTTTGCTTCAACCTTCGCGATCTTACAGTGTCTTATTGTAATAATGTGGAGGAGGTTGGAACATTGCCAACTACACTTGTAAATTTATCATTGAAGCTTTGTGATAATTTGACAAAAATGATACAATATGCCATCTTCCAAAACTTCAAAAGCTACAATTGCTAG___TTGCAAGAAATTGGAAGAGTTGCCATGTATGGAATCATTGTTATCTTTGAGGTATTTGAACACAAGTGGGTGTGTGAGGTTGAAGAGCATAGGGGGGTTGGGGCAGCTGTCACAACTTCAACAACTATCTGTTAGTGGGTGTTCCGAGTTACAGGAGGTGGAAGACATCCAACATTGTATGTCATTGCAGAATCTGTATGTTGGAGACTGTCCCAAACTGCAACAAACAGTTTTAAACATGTCAGGTGTTAGATGGCGTTTAATTAATAAATAATAAATGC

Fln Alignment:

sp_v1.1_unigene26426___NLQQIQLVTCQAFESLPDSFGNLTKLQQIQLSNFPALKSLPESFGNLTNLLQIKLSWCPTLERLPDSFGKLIKLQHLDLDSCTNLTMSSETLGNISTLQYINLSNCGKIEVFPPQVAHQRSLKMLYMRGTMLKELPSEIGELSDLEVLDVG-PLLDTXXXXXXXXXXXXXXXXYVCKGLKCLPVLLGDLKNLKELQLHKCKELACLPPSLGQLAQLTELRVIDCPLICELPFKEVK--GETLSDL--DSSIRYCILPRLQLLEVAGIGISEVSFAEGVCFNLRDLTVSYCNNVEEVGTLPTTLVNLSLKLCDNL
D5AB91_______________NLHHMNLVCCRKLKRLPDSLGNLTNLHHINLTLCRKLERLPDSFGSLMNLHHLDLSLCKKLERLPNSFGSCNRIKYLNSSCCSNLTISSDTLGNIRTLEHIDFSGCGKIELWPLQLAHQRSLKILKLTGTNIKELPSAIEVPTDLEVLWAGSPLLDT------------------------LYPLLGDLKNLKELRLKDCRELKCLPASVGRLSQLTQLEVAGCPAI-ELLFKKVREQRETVRTLKFNSSI-HKYMPCLQELTPQDTEISEVSFDEGVCPNLRKFILRECINLVEVGTLPNTLTYVKVSSCYNL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
967	66		33		0.997452
974	33		33		0.997753
981		66		33	0.997452
1076	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain