SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26423

Length: 1936 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26423

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transducin family protein / WD-40 repeat family protein	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	transducin family protein	-	-	72%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	72%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	72%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	72%
Blast2go	WD40-repeat-containing domain	IPR017986	-	72%
Blast2go	WD40 repeat, conserved site	IPR019775	-	72%
Blast2go	WD40 repeat, subgroup	IPR019781	-	72%
Blast2go	WD40 repeat 2	IPR019782	-	72%
Blast2go	G-protein beta WD-40 repeat	IPR020472	-	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPU3

Fln msg:

Fln protein: MVGMEGAHQTNEDESESEFIDEDDVIDEISIDEEDLPDADVEGEDVQEDNRRSEPDENSSSLDDAIHTFEGHEDTLFAVACSPVDATWVASGGGDDKAFMWRIGHAMPFFELKGHTDSVVALSFSNDGILLASGGLDGVVRIWDASTGNLIHVLDGPGGGIEWVRWHPKGHLVLAGSEDYSTWMWNADLGKCLSVYTGHCESVTCGDFTPDGKTICTGSADGSLRVWNPQTQESKLTVKGYPYHTEGLTCLSISSDSTLVVSGSTDGSVHVVNIKNGKVVASLVGHSGSIECVRFSPSLTWVATGGMDKKLMIWELQSSSLRCTCQHEEGVMRLSWSLSSQHIITSSLDGIVRLWDSRSGVCERVFEGHNDSIQDMVVTVDQRFILTGSDDTTAKVFEIGAF*

Protein Length: 404

Fln nts: ATGGAATTGAAAGAAGGGCGGCCTAGCGTAAAGGGTTTGGTGTAGTGGGTGCAATTGGACTATTGTGCCGCTGCAGTTTGCTTGCGTACCTCTCCTGTAGCAGGTAATTAATCTTTGGTTATCTAGCACTTCCTCGGCTCGGTACACGGATAAATATATGACCTTTGTTATTCTGTCGAGCACCTGCGGACCGGGGTAGTAGCATACATATGTAGGTTGAGAGCGAGAGGATAGCAAAATCCTTACCTATAGCCCCCGCAAGTAGTGGAAGTAGCACTGGCAGTCAATCTAGAAGCATAAGTAGTAACGGAAGAAGCACCACTAGCATCAAAGCTAGAAGCAGAGTACTCCGTTTTCTACTTTTCCTGGAAAGGGCCATTGAATGT_-_ATGGTTGGAATGGAGGGGGCACATCAGACTAACGAGGACGAGAGCGAATCAGAATTCATCGACGAGGACGATGTGATTGATGAAATTTCCATAGACGAGGAAGATCTTCCAGATGCTGATGTGGAAGGCGAAGATGTGCAAGAAGACAACAGAAGAAGTGAGCCAGATGAGAACTCAAGTAGTTTGGACGATGCTATACACACTTTCGAAGGTCATGAAGATACTTTGTTTGCTGTAGCATGCAGTCCAGTTGATGCAACATGGGTTGCATCAGGTGGTGGAGATGACAAAGCTTTTATGTGGAGAATTGGTCATGCAATGCCATTTTTTGAGCTGAAAGGGCATACCGATTCTGTTGTAGCCTTGTCTTTCAGTAATGATGGGATTTTACTTGCATCTGGTGGTTTGGATGGAGTAGTTCGCATCTGGGATGCTTCTACGGGAAATCTCATACATGTACTAGATGGCCCTGGAGGGGGGATTGAGTGGGTCAGATGGCATCCAAAAGGGCATTTAGTCTTGGCAGGATCAGAGGATTACAGTACTTGGATGTGGAATGCTGATCTTGGAAAGTGCCTTTCAGTATATACTGGTCATTGCGAATCTGTAACATGTGGCGATTTTACGCCTGATGGAAAGACTATCTGTACCGGCTCTGCAGATGGTTCCTTGCGGGTATGGAATCCACAGACACAAGAAAGTAAACTCACTGTAAAAGGGTATCCATACCACACAGAGGGTCTAACATGCTTGAGTATTAGTTCAGATTCCACATTGGTTGTTAGTGGCTCCACAGATGGCAGTGTTCACGTGGTTAACATAAAAAATGGAAAGGTGGTTGCTTCCTTAGTTGGTCATTCTGGATCAATAGAATGTGTCAGGTTTTCACCTAGCTTGACTTGGGTTGCAACTGGTGGGATGGATAAAAAACTAATGATTTGGGAATTACAAAGCTCATCACTGCGATGCACTTGTCAGCATGAGGAAGGTGTGATGAGGTTATCATGGTCATTGTCATCCCAGCACATAATAACTTCCTCCCTTGATGGAATTGTCCGCCTTTGGGATAGTCGTTCAGGGGTTTGTGAAAGAGTTTTCGAGGGTCACAATGATTCAATTCAGGATATGGTGGTGACAGTGGATCAACGGTTTATCCTTACAGGATCAGATGACACGACTGCGAAAGTTTTTGAAATTGGGGCATTTTGA___TTTTATATACTGTTTCATTCAAAATTATTGCCATGTTTGATTCTGAGTCACAGCAGAAGATTAGAGGAGCTGAGACAGGTAATAAATTTCTTTCCACAAGATAACATAGGTAACTATCGACTGAAGTTAACTGGGAGGCAGAAGCTAACTCTGTTGGTTTCTTTTTCTGTAAGGTTCTTTTAACAATGATAATGTTGTATCTACAATATTTTTGTAATTATCTTTTAGCAGTTGACATTAGTATTTGAGTAAAATTTATAAGGTTCATGTTCTCATGTCAAAATGATTATATTTTTTCATTATTTTTGTTAAATGGATCTTCTAATTTACAATTTCTAGTT

Fln Alignment:

sp_v1.1_unigene26423___MEGAHQTNXXXXXXXXXXXXXXXXXXXXXXXXLPDADVEGEDVQEDNRRSEPDENSSSLDDAIHTFEGHEDTLFAVACSPVDATWVASGGGDDKAFMWRIGHAMPFFELKGHTDSVVALSFSNDGILLASGGLDGVVRIWDASTGNLIHVLDGPGGGIEWVRWHPKGHLVLAGSEDYSTWMWNADLGKCLSVYTGHCESVTCGDFTPDGKTICTGSADGSLRVWNPQTQESKLTVKGYPYHTEGLTCLSISSDSTLVVSGSTDGSVHVVNIKNGKVVASLVGHSGSIECVRFSPSLTWVATGGMDKKLMIWELQSSSLRCTCQHEEGVMRLSWSLSSQHIITSSLDGIVRLWDSRSGVCERVFEGHNDSIQDMVVTVDQRFILTGSDDTTAKVFEIGAF
B8LPU3_______________MPDEHQTNEDESESVFIDEDDVLDEISIDEEDLPDADVEGEDVREDNGESEPDETSSSLDDAIHTFEGHEDTLFAVACSPVDATWVASGGGDDKAFMWRIGHTTPFFELKGHTDSVVALSFSNDGLLLASGGLDGVVRIWDASTGNLIHVLDGPGGGIEWVRWHPKGQLVLAGSEDYTTWMWNADLGKCLSVYTGHSESVTCGDFTPDGKTICTGSADGSLRVWNPQTQESKLTVKGHPYHTEGLTCLNISSDSTLVVSGSTEGSVHVVNIKNGKVVGSLVGHSGSIECVGFSPSLTWVATGGMDKKLMIWELQSSSLRCTCQHEEGVMRLSWSSSSRHIISASLDGIVRLWDSRSGVCERVFQGHSDSIQDMAITVDQRFILTGSDDKTAKVFEIEAF

SNPs (tot: 69)

Position	A %	C %	G %	T %	Probability
723		16		83	0.994512
737		83	16		0.994512
774	25	75			1.0
785	25			75	1.0
860	71			28	1.0
879	75		25		1.0
892	11	88			0.923564
934		25		75	1.0
1016	62		37		1.0
1019			62	37	1.0
1040		37		62	1.0
1043		37	62		1.0
1076	33		66		1.0
1079	66		33		1.0
1082	33		66		1.0
1095		33		66	1.0
1199		28		71	1.0
1205		71		28	1.0
1231		12	87		0.992554
1268		28		71	1.0
1269	14		85		0.993533
1301		71		28	1.0
1323	85	14			0.993533
1379		72		27	1.0
1401			45	54	1.0
1403			36	63	1.0
1425			70	30	1.0
1427		30		70	1.0
1463			57	42	1.0
1498	75		25		0.996473
1528			20	80	0.995493
1563	75		25		0.996473
1571	50		50		1.0
1575		20	80		0.995493
1576			20	80	0.995493
1578		20		80	0.995493
1579			20	80	0.995493
1583	80	20			0.995493
1584	80	20			0.995493
1590			75	25	0.996473
1594	25			75	0.996473
1596		20		80	0.995493
1598	80			20	0.995493
1599		20		80	0.995493
1600			20	80	0.995493
1602			20	80	0.995493
1604		20		80	0.995493
1605	80	20			0.995493
1607	80			20	0.995493
1608		80	20		0.995493
1609			20	80	0.995493
1610		20	80		0.995493
1612	20			80	0.995493
1616		20		80	0.995493
1642		60		40	1.0
1650	40		60		1.0
1654	20		80		0.995493
1665		60	40		1.0
1675	25			50	1.0
1689			60	40	1.0
1728			60	40	1.0
1736	40		60		1.0
1751	60	40			1.0
1778		50		50	1.0
1788	41		58		1.0
1792	58			41	1.0
1808	58			41	1.0
1822		88		11	0.923564
1854	33	66			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain