SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26404

Length: 1672 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26404

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ADP-ribosylation factor, putative; K07952 ADP-ribosylation factor related protein 1	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	arf-like gtpase	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	GTP binding	GO:0005525	Molecular Function	0.0	87%

Source	InterPros	Term	Type	Identity
Blast2go	Small GTPase superfamily, Rab type	IPR003579	-	87%
Blast2go	Small GTP-binding protein domain	IPR005225	-	87%
Blast2go	Small GTPase superfamily, SAR1-type	IPR006687	-	87%
Blast2go	ADP-ribosylation factor	IPR006688	-	87%
Blast2go	Small GTPase superfamily, ARF/SAR type	IPR006689	-	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYS0

Fln msg:

Fln protein: MFSLFYGLWKYLFSKTEFHVLILGIDKAGKTTLLEKLKTMYSDSEGLPPDRIVPTVGLNIGRTEALKSKLVFWDLGGQIGLRTIWEKYYEEAHAVIYVVDAACQSRFEDTKSALEKVLRHEDLQGAPILIYANKQDLPGAVSAEELARYLDLKELNERPYMFQAISAYDGMGIKDGINWLVDAMERSKRFEVLSQRADVAVAV*

Protein Length: 205

Fln nts: ATGGGGATAAACTTTAGAAAACGTAACGTAGCCCTGCGATCCTCTTCCCTAAGACATAGTCCCAACAAAAGCATAAGAGATTATATTTGTTAAATAGTTATTTATTTTCACTTGATAAAATCGAGGCATAGAAGTCTTTACACGGATCGCCATAAAGCCTCCAATGGAATATATGTGCTCAGATTTCATCTACTACCTTTCATCATTGTCATATCTGTAGATTTATCATCGGTTGCGAATTAGATCTCATTCGCATCAAAATTTACAGGCGAGAGTTCGAACCACGGCAGAATCATTGAGGGACTCGAAGCATGCGTTCTCTTTCGATCTTCACACGATCTGCTGCACAAGATTAAAGGGAGAGATTCTTCAGCTTTCTCACGCATCCTTATAGTGCTCCTGTTTTTGGGAGCTGGAATATTATACACCATGGTTGGACAAGAAATTTCGTGTTGGACCTTATAAACGGGTTCTGCATGAAGCCTAGAAGCTAAGAGCTGAAAGCAGAAGGTGATAGAGTATCTTGACGAAAAGGG_-_ATGTTTTCATTGTTCTATGGACTGTGGAAGTACCTCTTCAGTAAAACAGAATTTCATGTTCTTATTCTCGGCATCGATAAAGCTGGCAAAACTACATTGCTGGAAAAGCTGAAAACAATGTATTCAGATTCTGAAGGACTCCCACCAGATCGAATTGTTCCAACTGTTGGACTCAACATTGGTCGTACAGAGGCTTTGAAATCAAAGCTTGTATTTTGGGACTTAGGAGGTCAGATAGGCCTACGTACAATTTGGGAAAAATACTATGAAGAGGCACATGCAGTAATATATGTTGTTGATGCAGCATGCCAGTCACGTTTTGAAGACACAAAGTCTGCTTTAGAAAAGGTACTGAGGCATGAAGATCTGCAAGGTGCTCCAATTTTGATCTATGCAAATAAGCAGGATCTTCCAGGAGCTGTGTCTGCTGAAGAACTGGCAAGATATCTGGACTTAAAGGAGCTGAATGAAAGGCCATATATGTTTCAAGCAATTTCTGCATATGATGGGATGGGGATCAAAGATGGGATAAATTGGTTAGTTGATGCCATGGAAAGAAGTAAACGCTTTGAAGTGTTAAGCCAGCGGGCAGATGTGGCTGTTGCTGTATAG___TGTCTCCTTCAGAGTGTTCCATAATGCTTTGTTTTCTCTTCTCCAACCATTTGGCCTTCAAAATATCCTGAAATGTATCAAATGTTGCCAAGGCCATATGGAATGTTTGGTCCGTAATCTCTTCTTTAAGGCTTCTGGAGTTGCCAAGGTAGTTTAACTTATTGGAGCAATGGCTTCAATTTGATTTTGATCATAATGCTATTGGAAGTTTATTTTCAAGGCTCATCTGCAGATGATTCGTCCCATGTATGTTATATTCATTTATATAGATGGGCATAGACTATTGTAGTTTGTCAGCGGAGTGAGATATTGTTTATACTCTCATTCTTTTCTTCTTGCAAAGCAGAGGTAGTAAAACCCTAGAGGGCAGCTAACAGTAGGAGAGCACATCTTTTATTTTTATTTATTATGGTTATGATATATGAGTTGTGAAGGTTCCAATGTTATCATACAACTTGATTATACCTTCAATTCAAGTTTTTTCACAAAATTGTGTATTTTTCAGGGTTCATTGATCGACCTTA

Fln Alignment:

sp_v1.1_unigene26404___MFSLFYGLWKYLFSKTEFHVLILGIDKAGKTTLLEKLKTMYSDSEGLPPDRIVPTVGLNIGRTEALKSKLVFWDLGGQIGLRTIWEKYYEEAHAVIYVVDAACQSRFEDTKSALEKVLRHEDLQGAPILIYANKQDLPGAVSAEELARYLDLKELNERPYMFQAISAYDGMGIKDGINWLVDAMERSKRFEVLSQRADVAVAV
A9NYS0_______________MFSLFYGLWKYLFSKIEFHVLILGIDKAGKTTLLEKLKTMYSDSEGLPPDRIVPTVGLNIGRTEALKSKLVFWDLGGQVGLRTIWEKYYEEAHAVIYVVDAACQSRFEDTKSALEKVLRHEDLHGAPILIYANKQDLPGAVSAEDLARYLDLKELNERPYMFQAISAYDGLGIKDGINWLVDAMERSKRFELLRQRADVAVAV

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
191		25		75	0.996473
197		75		25	0.996473
198		75		25	0.996473
253		80	20		0.995493
451	25		75		0.996473
546	66		33		0.997452
1594		14		85	0.993533
1613	83		16		0.994512
1626			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain