SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26402

Length: 2456 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene26402
ATGGGGAAGCAACAGGGAAGATACGTGGTGTGGGTAATCACAGTGCTGTACACCATTATGATCTGCCTCGCTGGAATGTGCGATGGGTTGTTAGACGACTCTGATTGATAGACTAAAAAGGAGAAAGCATTTGCCTCAACATACGAGGACAGCATCCACAGGGTGATTGCAGTGGGTGACCAGAACCCTTGGACAACCCTTGGACAGATCAAAAGGGTGAAATATCATTTCGGTTCTCGACCAAATCCTTTACCAGGGGAGTGGTGAGGCCTGAGCTTTTCTGGAGTGGCTGCCTGCATCTACGAGAAGGTTCAGCGGGTTTGTGAATGGCAATCCAGTTACATGGATAGATAAATTGGATTATGAGCTGTTGGATATTTAGATCCAGTGCAGTTTGAGAGCGTTTTTCGCATCTTTGTCTGTGGAAGGTGAGAGGACTCTATCAGATCTGTCAATGTCTCACGGTTTTTTCATCATCTGGAGTTGTTGCTATTTTGATGTGGGAATTAGTAGACATAGCTACTAGCTTTTACAGTTGCCCTCGCCAATTGTTGGTTGTCGGCAGTGGATTTGATGTATTGCACGTGGTGTTGTTATAAGCACTTGAGAGGAACCTGTCTGTGGTTTTGGCAAGACATAAACAGATCTGTTAGGAGGTTTTGAGTATTGGAGCGAGTTGATGCTCGAATTGATATACTCAGTGTATATCTATCAAAGCACCACTGCTATAAGAAGTTGAGAGGGATCTGCCTGATTTTGGGTATTGCAAAGAAGCATTGATATAAGGGATCTGCCTTTCTCCTGTTCATATGGTGGTATCAGCATCGGATTGAGCCGAGATTTTGATATTGAAATTTGGAGAGAAGCAGTTGTTTAGAGACTCTGTCTCTTGGGTTTTCTTGTAGATCTGTTGCTGGTCATATGGTGGTGCCACCATTGTATTGAGCTGAATTTTTGATATTGGTGTTGGTAGATTTATCATATATTGCAAGCATAGAGCAGAGGCTTGTGTGTTTGTGAGGAGAAACAAAAATGCACGCAAAATCAGATTCAGAGGTGACCAGTTTGGCACCTTCATCCCCAACCAGGTCACCTAGAAGACCAGTATACTATGTGCAGAGTCCTTCCCGGGATTCTCACGATGGGGAAAAGATGTCATTTCAGTCCACTCCTATTCTCAGCCCCATGGGGTCACCCCCTCATTCAAATTCGTCCCTCGGGCGCCATTCCAGGGAGTCATCCACTAGCAGGTTTTCGGGGTCATTGAAGCCTGGCTCCCGGAAAGTGCAGCCACATGATGGACGCCATGGCAAAGGAAATAAGGGCTGGAACCAGTGCAGTGTCATAGAAGAGGAAGGACCGTATGATGAATTTGACGACGAGAAGAGCTGGCCGAGGCGGTGTTATGTTTTTCTCTTTATCTTGTGTTTTGTTCTTCTTTTCACAATGTTTTCACTCATTCTGTGGGGTGCCAGTAGGCCCTACAAACCAAAAGTCACTGCGCAGAGTATTATCTTCCATGATTTCTATGTGTCCGAGGGGTCAGATGCAACCGGAGTGCCCACCAAGATGATAACCTTAAACGCTACTTTGAAAATGCGCTTCTACAACCCTGCCACGTTCTTTGGGGTTCATGTGACTTCCACACCCATGGATCTGATGTACTATCAACTTGTAGTTGCCTCGGGCCAGGTACAGAAGTTTTATCAGTCCAGAAGAACCCATCGCACTATAGATGTAGTGTTGCAGGGCAAGAAAGTGCCTCTCTACGGAGGTGGTGCTAGCTTGACTAGCGCTGATGCAGTGGGTGGCATTCCTTTAGACTTAACATTTGATATCAAAGCCAAGGCTTATGTCTTGGGTAAGCTTGTTAAAACAAAATTCAGGAAGCGTGTTTACTGCAAAATTGATTTGGACTCGGCGACCCTCATGAAATCCAGATCACTGAAGAAGTCTTGCGAGTATGATTAGTGCAGAAGAATACAATGTCGCAGGCTCAGGTTTAGAAAAGTTATACTAATGCGATTATTTTGTTTTATTCAGTGTAAAGATTTTTAGTTTCAAGGCTAATGGACTTAGTTGCCGTTGCCCCTTCATCGGGTCTGACCAAGTAGTTTGCTTATGAAATGACTTCTAGTCAACATTTGATTGTAAATGTAAAGATGCCTCTGTATTCAATTGAGAGAACGCTAAAAGAAGAGATCGATGATGGGTATTTTTCGGGTAGTAGGCGATGAACTTAGTTTCAGCCATTAGGGATAAGAGGCATTCCTTATGACGGGAACGCTAGAGTCTAAATAAAGCTTGAACTTTAGGTTCACAGCTGATGAATGTATTGGTTGATGGAAGACAAATTAAATTAATTATTTAATTCCTTGTATTTTGCTTCGAAAGCGATGAATGTCACATGAACAAATATATATTTTGGAATTGGAAAACCAGAAAACTTAGTACCT

Ace file of the UniGene sp_v1.1_unigene26402

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LEA_2 domain containing protein	-	-	0.0001	22%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	protein	-	-	0.0	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Late embryogenesis abundant protein, LEA-14	IPR004864	-	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9R8

Fln msg: your sequence is longer than subject: 313 - 174

Fln protein: MHAKSDSEVTSLAPSSPTRSPRRPVYYVQSPSRDSHDGEKMSFQSTPILSPMGSPPHSNSSLGRHSRESSTSRFSGSLKPGSRKVQPHDGRHGKGNKGWNQCSVIEEEGPYDEFDDEKSWPRRCYVFLFILCFVLLFTMFSLILWGASRPYKPKVTAQSIIFHDFYVSEGSDATGVPTKMITLNATLKMRFYNPATFFGVHVTSTPMDLMYYQLVVASGQVQKFYQSRRTHRTIDVVLQGKKVPLYGGGASLTSADAVGGIPLDLTFDIKAKAYVLGKLVKTKFRKRVYCKIDLDSATLMKSRSLKKSCEYD*

Protein Length: 314

Fln nts: ATGGGGAAGCAACAGGGAAGATACGTGGTGTGGGTAATCACAGTGCTGTACACCATTATGATCTGCCTCGCTGGAATGTGCGATGGGTTGTTAGACGACTCTGATTGATAGACTAAAAAGGAGAAAGCATTTGCCTCAACATACGAGGACAGCATCCACAGGGTGATTGCAGTGGGTGACCAGAACCCTTGGACAACCCTTGGACAGATCAAAAGGGTGAAATATCATTTCGGTTCTCGACCAAATCCTTTACCAGGGGAGTGGTGAGGCCTGAGCTTTTCTGGAGTGGCTGCCTGCATCTACGAGAAGGTTCAGCGGGTTTGTGAATGGCAATCCAGTTACATGGATAGATAAATTGGATTATGAGCTGTTGGATATTTAGATCCAGTGCAGTTTGAGAGCGTTTTTCGCATCTTTGTCTGTGGAAGGTGAGAGGACTCTATCAGATCTGTCAATGTCTCACGGTTTTTTCATCATCTGGAGTTGTTGCTATTTTGATGTGGGAATTAGTAGACATAGCTACTAGCTTTTACAGTTGCCCTCGCCAATTGTTGGTTGTCGGCAGTGGATTTGATGTATTGCACGTGGTGTTGTTATAAGCACTTGAGAGGAACCTGTCTGTGGTTTTGGCAAGACATAAACAGATCTGTTAGGAGGTTTTGAGTATTGGAGCGAGTTGATGCTCGAATTGATATACTCAGTGTATATCTATCAAAGCACCACTGCTATAAGAAGTTGAGAGGGATCTGCCTGATTTTGGGTATTGCAAAGAAGCATTGATATAAGGGATCTGCCTTTCTCCTGTTCATATGGTGGTATCAGCATCGGATTGAGCCGAGATTTTGATATTGAAATTTGGAGAGAAGCAGTTGTTTAGAGACTCTGTCTCTTGGGTTTTCTTGTAGATCTGTTGCTGGTCATATGGTGGTGCCACCATTGTATTGAGCTGAATTTTTGATATTGGTGTTGGTAGATTTATCATATATTGCAAGCATAGAGCAGAGGCTTGTGTGTTTGTGAGGAGAAACAAAA_-_ATGCACGCAAAATCAGATTCAGAGGTGACCAGTTTGGCACCTTCATCCCCAACCAGGTCACCTAGAAGACCAGTATACTATGTGCAGAGTCCTTCCCGGGATTCTCACGATGGGGAAAAGATGTCATTTCAGTCCACTCCTATTCTCAGCCCCATGGGGTCACCCCCTCATTCAAATTCGTCCCTCGGGCGCCATTCCAGGGAGTCATCCACTAGCAGGTTTTCGGGGTCATTGAAGCCTGGCTCCCGGAAAGTGCAGCCACATGATGGACGCCATGGCAAAGGAAATAAGGGCTGGAACCAGTGCAGTGTCATAGAAGAGGAAGGACCGTATGATGAATTTGACGACGAGAAGAGCTGGCCGAGGCGGTGTTATGTTTTTCTCTTTATCTTGTGTTTTGTTCTTCTTTTCACAATGTTTTCACTCATTCTGTGGGGTGCCAGTAGGCCCTACAAACCAAAAGTCACTGCGCAGAGTATTATCTTCCATGATTTCTATGTGTCCGAGGGGTCAGATGCAACCGGAGTGCCCACCAAGATGATAACCTTAAACGCTACTTTGAAAATGCGCTTCTACAACCCTGCCACGTTCTTTGGGGTTCATGTGACTTCCACACCCATGGATCTGATGTACTATCAACTTGTAGTTGCCTCGGGCCAGGTACAGAAGTTTTATCAGTCCAGAAGAACCCATCGCACTATAGATGTAGTGTTGCAGGGCAAGAAAGTGCCTCTCTACGGAGGTGGTGCTAGCTTGACTAGCGCTGATGCAGTGGGTGGCATTCCTTTAGACTTAACATTTGATATCAAAGCCAAGGCTTATGTCTTGGGTAAGCTTGTTAAAACAAAATTCAGGAAGCGTGTTTACTGCAAAATTGATTTGGACTCGGCGACCCTCATGAAATCCAGATCACTGAAGAAGTCTTGCGAGTATGATTAG___TGCAGAAGAATACAATGTCGCAGGCTCAGGTTTAGAAAAGTTATACTAATGCGATTATTTTGTTTTATTCAGTGTAAAGATTTTTAGTTTCAAGGCTAATGGACTTAGTTGCCGTTGCCCCTTCATCGGGTCTGACCAAGTAGTTTGCTTATGAAATGACTTCTAGTCAACATTTGATTGTAAATGTAAAGATGCCTCTGTATTCAATTGAGAGAACGCTAAAAGAAGAGATCGATGATGGGTATTTTTCGGGTAGTAGGCGATGAACTTAGTTTCAGCCATTAGGGATAAGAGGCATTCCTTATGACGGGAACGCTAGAGTCTAAATAAAGCTTGAACTTTAGGTTCACAGCTGATGAATGTATTGGTTGATGGAAGACAAATTAAATTAATTATTTAATTCCTTGTATTTTGCTTCGAAAGCGATGAATGTCACATGAACAAATATATATTTTGGAATTGGAAAACCAGAAAACTTAGTACCT

Fln Alignment:

sp_v1.1_unigene26402___MFSLILWGASRPYKPKVTAQSIIFHDFYVSEGSDATGVPTKMITLNATLKMRFYNPATFFGVHVTSTPMDLMYYQLVVASGQVQKFYQSRRTHRTIDVVLQGKKVPLYGGGASLTSADAVGGIPLDLTFDIKAKAYVLGKLVKTKFRKRVYCKIDLDSATLMKSRSLKKSCEYD
D5A9R8_______________MFSLILWGASRPYKPEITVQSIIFHDFYVSAGSDATGVPTKMISLNATLKMSFYNPATFFGVHVTSTPMDLMYYQLVVASGQVKRFYQSRKTHRTISVVLQGKKVPLYGGGASLTSSDAVGGVPLDLTFDIKAKAYVLGKLVKTKFSKRVYCKIDMDSAKLMKSRSLKNACEYD

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
478		66		16	0.988813
508		16		83	0.994512
690		20		80	0.995493
893			80	20	0.995493
919	20	80			0.995493
1542			66	33	0.997452
1877		80		20	0.995493
1878	80		20		0.995493
1879	80		20		0.995493
1880	80		20		0.995493
1924	75			25	1.0
1926	25	75			1.0
2034		1		94	0.960243
2379	23			7	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain