SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26391

Length: 1306 nt

Origin of reads: Biogeco_1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene26391 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	thaumatin-like protein, putative	-	-	3.0e-19	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	pathogenesis-related thaumatin-like protein	-	-	0.0	52%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Thaumatin, pathogenesis-related	IPR001938	-	0.0	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEF8

Fln msg:

Fln protein: MVGSRSGDQLIMASWAAIFLVTFTSFLCSCSAESPMAYKTIRVVNNCAFPVWPATAGSTNFPPTQMKKVGAGESCSWNVDPFWWGFIWGRTGCVFNSQGIGGCDSGDCGGKLQCKTDSQDQIRAITKAEFELLGGIAKPDTYSVTLENGYSLPMSVVPSYAANNVSSSRPCESMWCRANANVVCPKELQMKKKGSVVTACNGHFDGYLPSSPAFSEAFKKACPRAFPFQSSTICPPSTASYTLIFCPRRLSP*

Protein Length: 254

Fln nts: ATGGGGCTCTCACTTCTATTTCTATTTATTTTCTTGAAGAGATTTCAAATTGCGGTTATTTGTGAAGTTGCGAGCAACCAAAAATTAGACGCAGTAAGCTCTCCGTCAATCTTCGTACTCTGTTACTAAAATTATGGCGTGACATCTTGGCTGCAGACACAAATTCAGGGAAATCTGTGCATTTACATTTTGGTGTTATAGAGACTGTTATTACAACTAGTCTCCAAA_-_ATGGTGGGAAGTCGAAGCGGCGACCAGTTAATAATGGCGTCATGGGCAGCTATATTTCTTGTTACATTTACGTCTTTTCTTTGTTCTTGCTCTGCAGAGTCACCTATGGCTTATAAGACGATAAGGGTGGTGAACAATTGTGCATTTCCGGTGTGGCCTGCTACTGCGGGTTCAACTAATTTTCCTCCCACTCAGATGAAGAAAGTGGGAGCAGGCGAGTCATGTTCATGGAATGTAGATCCATTCTGGTGGGGATTCATTTGGGGGCGGACTGGTTGTGTCTTCAATTCCCAAGGGATCGGAGGCTGCGACTCCGGTGATTGTGGAGGAAAGCTGCAGTGCAAAACCGATAGTCAAGATCAAATCAGGGCAATCACTAAAGCTGAGTTCGAACTACTCGGAGGAATAGCAAAGCCGGACACGTATTCGGTTACGTTGGAGAATGGTTACAGTCTTCCAATGTCGGTGGTTCCAAGTTATGCCGCCAATAATGTCAGTAGCAGTCGGCCCTGTGAGTCCATGTGGTGCAGAGCCAACGCTAATGTGGTGTGCCCGAAAGAGTTGCAAATGAAGAAGAAAGGGAGCGTGGTTACTGCCTGCAACGGTCATTTCGATGGATATTTGCCCAGTTCACCCGCGTTCAGCGAGGCATTTAAGAAGGCGTGTCCTCGTGCGTTCCCCTTCCAAAGTAGCACCATATGCCCTCCTTCCACGGCTTCCTACACCCTCATCTTCTGCCCTCGCCGACTTTCGCCCTGA___ATATGTAATGTGTTTTCTAAGTTTAGTTCCGTTGGGCTTCTCTGGTTCAATCGTTCGACTACAAGGCAGTTCAGAATTTGCTTTCTGGCTTAGGCTCGTTGTGTGTACGAATCGCAAATTGAGAGGTTGCATTACTTCGTTATGATTGCTACTAGTGTGTGGCGTCAGCCGCGAACATGAATTTGCTGCATAATGGAGGCGTTCTTTAGTTTTGTTGTTTTGTTTTTCTTGTCGTCAAACACCCATCCCAACTGAACTCTTGTACACTGCACACTGAAGTATTGTACACTGAGATATTGTACAATTTGTTTTTAGCATC

Fln Alignment:

sp_v1.1_unigene26391___MVGSRSGDQLIMASWAAIFLVTFTSFLCSCSAESPMAYKTIRVVNNCAFPVWPATAGSTNFPPTQMKKVGAGESCSWNVDPFWWGFIWGRTGCVFNSQXXXXXXXXXXXGKLQCKTDSQDQIRAITKAEFELLGGIAKPDTYSVTLENGYSLPMSVVPSYAANNVSSSRPCESMWCRANANVVCPKELQMKKKGSVVTACNGHFDGYLPSSPAFSEAFKKACPRAFPFQSSTICPPSTASYTLIFCPRRLS
D5AEF8_______________MVGSRSSHQLTMTAWISMFLVTFTYFLCLSAAESPMVYKTIRVVNNCAFPVWPATVGSTDLPPPQMRKVRAGESYSWKADPFWSGSIWGRTGCVFNSQGIGGCDSGDCGGNLQCKDESH--IMAITKAEFELLGGIAKPDTYSVTLEKGYNLPMSVDPSYAANNISSSRPCESMECTANANVVCPKNLQEKKKGSVVTACNGHYDGYLPSSPAFSKAFQKACPRAFPFRSGTICPPSTASYTLTFCPRRPS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
558	85	14			0.993533
569		83		16	0.994512
654		16	83		0.994512
655	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain