SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26389

Length: 1560 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26389

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid permease (Fragment) n=1 Tax=Populus trichocarpa RepID=B9H4M6_POPTR	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	amino acid permease	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	acidic amino acid transport	GO:0015800	Biological Process	68%
Blast2go	neutral amino acid transport	GO:0015804	Biological Process	68%
Blast2go	basic amino acid transport	GO:0015802	Biological Process	68%
Blast2go	neutral amino acid transmembrane transporter activity	GO:0015175	Molecular Function	68%
Blast2go	acidic amino acid transmembrane transporter activity	GO:0015172	Molecular Function	68%
Blast2go	primary active transmembrane transporter activity	GO:0015399	Molecular Function	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Amino acid transporter, transmembrane	IPR013057	-	0.0	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQS2

Fln msg: your sequence is shorter than subject: 433 - 492

Fln protein: MDPEAPQTSLPVEFPVTDICIEETPHKETWNNSDLKSLLDDDGRPARAGTMWTASAHIITAVIGSGVLSLAWAISQLGWIAGPGVLVAFSFITFYTSALLADCYRYPDPVKGKRNHTSENPYMILFGMFQILLSQIPDFNRIWWLSIVAAIMSFGYSSIGLSLALAKVAGGHIHGSVTGVTVGTVTSAQKTWATFRALGNIAFAYSFSMLLIEIQDTIKSPPAENKTMKKATLVGISITTTYYMLCGCLGYAAFGDRSPANLLTGFGFYNPFWLVDLANVCIVVHLVGAYQVFVQPLFAFIEQWSFHKWPKSSFIHMEYSVNIPRYGLYKISVFKLVWRTCFVVTTTIISMMLPFFTDVLSLLGAVGFWPLTVYFPVEMYIVHRKIQRFTTKWMVLQTLSFVCLLVSLAAACGSIEGVVQDLKMYKPFKTTY*

Protein Length: 434

Fln nts: TATCTTTGCT_-_ATGGATCCAGAGGCCCCTCAGACTTCGCTTCCAGTAGAATTTCCTGTCACAGATATCTGTATAGAGGAAACCCCTCATAAAGAGACTTGGAATAACAGTGATTTGAAGAGTTTATTAGATGATGATGGCCGCCCGGCACGCGCAGGTACCATGTGGACTGCAAGCGCTCATATTATCACGGCAGTGATAGGCTCAGGAGTGCTTTCGCTTGCATGGGCAATTTCTCAACTAGGATGGATAGCTGGACCTGGGGTTTTGGTTGCTTTCTCTTTCATAACGTTTTATACTTCTGCTTTGCTTGCCGACTGCTACAGATATCCTGATCCAGTAAAAGGAAAAAGAAACCACACCTCCGAAAATCCATATATGATTCTGTTTGGGATGTTCCAAATTTTATTATCTCAAATACCCGACTTCAACAGAATCTGGTGGCTTTCAATAGTAGCTGCAATTATGTCATTTGGCTATTCATCAATAGGACTTAGCCTTGCTCTTGCTAAAGTAGCAGGAGGGCATATCCATGGTAGCGTTACTGGAGTAACAGTTGGTACAGTAACTTCTGCTCAGAAAACATGGGCTACGTTTCGAGCATTAGGAAATATTGCATTTGCCTATTCATTCTCCATGCTTCTCATCGAGATCCAGGACACTATAAAATCACCTCCAGCAGAGAATAAAACCATGAAGAAGGCCACGCTGGTTGGTATCAGCATTACAACTACTTATTACATGTTATGCGGTTGCCTCGGATACGCGGCCTTTGGTGATAGATCGCCCGCAAATCTTTTGACTGGTTTTGGATTTTACAACCCTTTCTGGCTTGTCGACTTAGCTAATGTGTGCATAGTCGTTCACCTGGTTGGGGCATATCAAGTCTTTGTACAACCCCTGTTTGCTTTCATTGAGCAGTGGTCTTTTCATAAGTGGCCAAAGAGCTCATTTATTCACATGGAATACAGTGTTAATATACCTCGGTACGGTCTGTATAAGATCAGTGTTTTCAAATTGGTCTGGAGGACATGCTTTGTGGTAACCACAACCATTATTTCGATGATGCTGCCATTTTTCACTGATGTGCTATCACTTCTGGGAGCTGTAGGCTTTTGGCCTTTGACAGTGTATTTCCCTGTGGAAATGTATATAGTCCACAGGAAGATCCAGCGCTTTACAACCAAGTGGATGGTTCTACAGACTTTGAGTTTTGTCTGCTTGCTCGTGTCACTGGCAGCTGCATGTGGGTCCATTGAAGGTGTTGTGCAAGATTTGAAAATGTACAAGCCCTTCAAGACAACATATTGA___ATTATTCCAAAAGTGAGCCTGACAGGATGATGCTGAAATTGATATTGAAACAGAAGAATCTAACTGCAAGTTGTTTCTTGGAATTTAGCCAGCACTTTTTGACACGCAGAGAAAGCTTGGTTCTGCACAACCACCCCTTGGTGGAAATATCTATGAATTTATGAATCGACCAGATTCCCCTAATGTGTATGCTTACATTTTTTGGTTTAAGTAATTTGATGTGTTTTTAATGCACAAGATTCCCACAAAAA

Fln Alignment:

sp_v1.1_unigene26389___MDPEAPQTSLPVEFPVTDICIEETPHKETWNNXXXXXXXXXXGRPARAGTM---------------------------WTASAHIITA-----VIGSGVLS-----------------LAWAISQLG----WIAG-------PGVLVAFSFITFYTSALL--ADCYRYPDPVKGKRN--HTSENPYMILFGMFQILLSQIPDFNRIWWLSIVAAIMSFGYSSIGLSLALAKVAXXXXXXXXXXXXXXXXXXAQKTWATFRALGNIAFAYSFSMLLIEIQDTIKSPPAENKTMKKATLVGISITTTYYMLCGCLGYAAFGDRSPANLLTGFGFYNPFWLVDLANVCIVVHLVGAYQVFVQPLFAFIEQWSFHKWPKSSFIHMEYSVNIPRYGLYKISVFKLVWRTCFVVTTTIISMMLPFFTDVLSLLGAVGFWPLTVYFPVEMYIVHRKIQRFTTKWMVLQTLSFVCLLVSLAAACGSIEGVVQDLKMYKPFKTTY
B8LQS2_______________MDREGTQTSLELELPSRNHASDIEDHRRHNGHSLDSEKFDDDGRPRRTGTLWTASAHIITAVIGSGVLSLAWSMAQLGWIAGPAVLIAFSFITLYTSALLADCYRSLDPVNGKRNYNYMAAVKANLGGLQTWLCGFTQYSNLYGTAIGYTITASTSMAAINRSDCFHS----KGKNYPCHPSNNPFMIMFGIVQLILSQIPDFDQLWWLSIVAAVMSFSYSSIGLGLSIGKVAEGNFHGTLTGVTVGTITGAQKVWQTFQALGDIAFAYSYSMILIEIQDTLRSPPAENKTMKKATVLGVSVTTLFYTLSGCFGYAAFGNSAPGNLLTGFGFYNPFWLVDFANACVVVHLVGAYQVFVQPLFAFIEEWCSHKWPRSQFIHKSYNINIPGYGLYKANLFRLVWRTCFVISTTLISMLLPFFNDVVGILGAVGFWPLTVYFPVEMYIAQKKIRRFTTKWMLLQTLSVVSFIVSLAAAAGSIEGIIQDLKSYKPFRTTY

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
422	11		88		0.923564
622	12	87			0.992554
787	22	77			0.999999
1027	9		90		0.999872
1303	82	17			1.0
1382			77	11	0.968132
1383			22	77	0.999999
1448			11	88	0.923564
1520	25		75		0.996473
1523	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain