SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26372

Length: 1917 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene26372 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine hydroxymethyltransferase n=1 Tax=Picea sitchensis RepID=A9NUX0_PICSI	-	-	96%
FL-Next	sp=Serine hydroxymethyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	glycine hydroxymethyltransferase	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	glycine decarboxylation via glycine cleavage system	GO:0019464	Biological Process	89%
Blast2go	response to cold	GO:0009409	Biological Process	89%
Blast2go	photorespiration	GO:0009853	Biological Process	89%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	89%
Blast2go	poly(U) RNA binding	GO:0008266	Molecular Function	89%
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	catalytic activity	GO:0003824	Molecular Function	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%
Blast2go	stromule	GO:0010319	Cellular Component	89%
Blast2go	apoplast	GO:0048046	Cellular Component	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUX0

Fln msg:

Fln protein: MAMRTVAAFATRVSRRHVFKSSVTQFAHRYSSEAAYSRSEKEKSHVTWPKQLNAPLQELDPEISDIIELEKNRQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEFIDMAESLCQKRALEAFRLDPKKWGVNVQPLSGSPANFHVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSAYFETMPYRLNESTGIIDYEQLERSATLFRPKLIIAGASAYARHYDYARMRKICDKQKAVLLADMAHISGLVAGGVVPSPFDFADVVTTTTHKSLRGPRGAMIFYRKGLKEVNKQGQEVIYDYEDKINAAVFPGLQGGPHNHTITGLAVALKQAATPEFKSYQEQVLSNCAHFAQCLINRGYELVSGGTDNHLVLVNLKNKGIDGSRVERVLELAHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFIEDDFAKVAEFFDLAVQLSMKIKSETKGGTKLKDFKATIESSPAIQDEIRSLRHAVEEYAKQFPTVGFEKSSMKYKE*

Protein Length: 521

Fln nts: ACGGCCAGGGCAACTGGAGGACAATGACCTCTATAACTCAAAATCGTGACCGTCCGTGAACGATAAGACGGGCTTCGTTTGACGAGCTCTTTCATCAACTCATCTATAAGGCAACCACAGTCTTGTAGATTGTGCGGCAGAGGTTGAGATTGGGGTGGGCA_-_ATGGCGATGAGAACAGTTGCTGCTTTTGCGACAAGGGTTTCCAGACGTCACGTGTTCAAATCCTCTGTGACTCAGTTTGCTCACCGATACTCCTCTGAGGCGGCTTATTCTCGAAGTGAAAAAGAAAAATCACATGTTACGTGGCCAAAGCAATTGAATGCACCATTACAAGAGTTGGATCCTGAGATTTCAGACATAATTGAGCTAGAAAAGAATAGGCAATGGAAGGGACTTGAACTTATTCCTTCGGAAAACTTCACCTCATTGTCAGTTATGCAGGCTGTAGGGTCAGTAATGACCAATAAGTACAGTGAAGGTTATCCTGGTGCAAGATACTATGGAGGAAATGAGTTTATTGATATGGCAGAGTCCTTATGTCAGAAAAGAGCCTTGGAAGCATTTCGTCTGGATCCAAAGAAATGGGGAGTTAATGTACAACCTTTATCAGGGTCTCCTGCAAATTTTCATGTCTACACGGCATTGCTGAAGCCACATGATCGAATCATGGCACTTGATCTCCCACATGGTGGTCATTTATCTCATGGTTACCAGACGGATACAAAAAAGATTTCCGCAGTCTCGGCATACTTTGAGACAATGCCGTACAGATTGAACGAATCAACTGGTATTATCGACTATGAACAGCTGGAGAGGAGTGCAACCCTTTTCAGACCCAAACTCATTATTGCAGGTGCTAGTGCTTACGCACGCCATTACGACTATGCTAGGATGCGCAAGATTTGTGACAAGCAAAAAGCTGTGCTGCTGGCGGATATGGCTCATATAAGTGGACTGGTAGCAGGAGGTGTTGTTCCATCTCCTTTTGATTTTGCAGATGTAGTGACGACAACTACACACAAGTCACTGCGTGGTCCACGTGGTGCAATGATCTTTTACAGGAAGGGTCTCAAGGAAGTTAACAAGCAAGGTCAAGAAGTTATATATGATTACGAGGACAAGATTAATGCAGCTGTATTCCCAGGTCTTCAAGGTGGTCCACATAATCATACTATAACAGGGTTAGCTGTTGCACTCAAACAGGCTGCTACTCCTGAATTTAAATCATATCAAGAGCAAGTTCTCAGCAATTGTGCTCATTTTGCGCAGTGTCTTATCAATAGAGGATATGAACTTGTTTCTGGTGGGACAGACAACCATTTGGTCCTGGTAAATTTGAAAAATAAGGGAATTGATGGTTCCAGGGTTGAAAGAGTGTTGGAACTGGCTCACATTGCAGCTAATAAAAACACAGTTCCTGGAGATGTCTCGGCAATGGTTCCTGGTGGAATTCGCATGGGAACCCCTGCTCTGACCTCAAGAGGTTTCATTGAGGATGATTTTGCAAAAGTTGCAGAGTTCTTTGATCTTGCAGTTCAATTAAGTATGAAAATCAAATCTGAAACAAAAGGTGGTACAAAGCTGAAGGACTTCAAGGCCACCATTGAAAGCAGTCCAGCCATACAGGATGAGATAAGAAGTCTTCGACATGCAGTGGAGGAGTATGCAAAGCAGTTTCCAACAGTTGGATTCGAAAAATCATCCATGAAATATAAGGAATGA___AATTACCTTGTGGTGTGAACAGGTCATGCCAGGCTTTGGTTTACAGTTTACACAGTTCCAAAGTGCATTGTTTACCAGAATTCCTCTGAGTTCAACTTCTGGTCTGTAATTTAACTAATACAAATGGTCAGAATCTAGCTCAAAGGGTGATGTAAATTTTCAGGCTTGATGTGCTGTCTAAAAATTCCAAAATGCA

Fln Alignment:

sp_v1.1_unigene26372___MAMRTVAAFATRVSRRHVFKSSVTQFAHRYSSEAAYSRSEKEKSHVTWPKQLNAPLQELDPEISDIIELEKNRQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEFIDMAESLCQKRALEAFRLDPKKWGVNVQPLSGSPANFHVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSAYFETMPYRLNESTGIIDYEQLERSATLFRPKLIIAGASAYARHYDYARMRKICDKQKAVLLADMAHISGLVAGGVVPSPFDFADVVTTTTHKSLRGPRGAMIFYRKGLKEVNKQGQEVIYDYEDKINAAVFPGLQGGPHNHTITGLAVALKQAATPEFKSYQEQVLSNCAHFAQCLINRGYELVSGGTDNHLVLVNLKNKGIDGSRVERVLELAHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFIEDDFAKVAEFFDLAVQLSMKIKSETKGGTKLKDFKATIESSPAIQDEIRSLRHAVEEYAKQFPTVGFEKSSMKYKE
A9NUX0_______________MAMRTVAAFATRVSTRDVFKSSVTQFAQRYSSEAAYSRTEKEKSHVTWPKQLNAPLHEVDPEITDIVELEKNRQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEFIDMAESLCQKRALEAFRLDPKKWGVNVQPLSGSPANFHVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSAYFETMPYRLNESTGIIDYDQLEKSATLFRPKLIIAGASAYARHYDYARMRKICDKQKAVLLADMAHISGLVAGGVVPSPFDFADVVTTTTHKSLRGPRGAMIFYRKGLKEVNKQGQEVIYDYEDKINAAVFPGLQGGPHNHTITGLAVALKQAATPEFKSYQEQVLSNCAHFAHCLIKRGYELVSGGTDNHLVLVNLKNKGIDGSRVERVLELAHIAANKNTVPGDVSAMIPGGIRMGTPALTSRGFLEDDFAKVAEFFDLAVQLSIKIKSETKGGSKLKDFKATIESSPAIQDEIRNLRHEVEEYAKQFPTIGFEKSSMKYKE

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1465		90		10	0.90298
1641		66	33		1.0
1674		11		88	0.999937
1770	13	86			0.999973
1771			13	86	0.999973
1778		85	14		0.999981
1779	7	42		50	1.0
1780		11	88		0.923564
1783		11	66	11	0.944822
1785	11	77			0.968132

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain