SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26360

Length: 1758 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26360

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	oxidoreductase, acting on the CH-CH group of donors (EC:3.5.2.2)	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Dihydropyrimidine dehydrogenase (NADP(+)).	EC:1.3.1.2	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Pyrimidine metabolism	00240	89%
Blast2go	beta-Alanine metabolism	00410	89%
Blast2go	Pantothenate and CoA biosynthesis	00770	89%
Blast2go	Drug metabolism - other enzymes	00983	89%
Blast2go	Metabolic pathways	01100	89%

Source	GOs	Term	Type	Identity
Blast2go	uracil catabolic process	GO:0006212	Biological Process	89%
Blast2go	cellular response to nitrogen levels	GO:0043562	Biological Process	89%
Blast2go	dihydropyrimidine dehydrogenase (NADP+) activity	GO:0017113	Molecular Function	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRT6

Fln msg: your sequence is longer than subject: 436 - 368

Fln protein: MASLGLNVQKINGAAAAGTNSPFLRAPGNPAATGHGKNKRVSFKIRASQGGDQNGAGPDLSVTVNGLHMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDSSKVINVTPRYARLRAGPNGSAKGEVIGWENIELISDRPLETMLKEFKQLKKDYPDRILIASIMEEYDKAAWEELIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCALLEEVCGWVNEKATIPVWAKMTPNVTDIAEPARVALRAGSEGIAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVHPIALAKVMSIAQMMKSEFPDPTLSLSGIGGVENGGHAAEFILLGANTVQVCTGVMMHGYGLAKQLCSELKDFMVKHNFSSVEDFRGLSLQYFTTHTDLVRRQREAIEQRKAVRKGLASDKEWTGDGFVKETEAMVSN*

Protein Length: 437

Fln nts: ATGGGGATCCTTTCTTCGATTGGCTTTCCCATTTCCTTTCTTTTCCTAGATTTTGTGATATTTTTGGAATCAATTTTGTAGGAGCAGAC_-_ATGGCGAGCCTTGGATTGAATGTACAGAAAATTAATGGAGCAGCCGCGGCAGGTACCAATTCTCCTTTTTTAAGAGCACCGGGTAATCCTGCTGCGACTGGCCATGGGAAAAATAAGAGAGTTTCGTTCAAGATAAGAGCCAGCCAAGGCGGAGATCAAAACGGGGCCGGTCCTGATTTGAGCGTGACCGTCAACGGCTTGCACATGCCGAATCCCTTCGTGATTGGTTCAGGTCCTCCCGGAACGAATTATACCGTCATGAAACGGGCCTTCGACGAAGGATGGGGGGCTGTCATTGCCAAAACGGTGTCTTTGGATTCAAGTAAAGTGATCAATGTGACTCCACGCTATGCTCGTCTCCGAGCAGGTCCTAATGGATCAGCAAAAGGAGAAGTCATTGGCTGGGAAAATATTGAACTTATCAGTGACCGTCCACTTGAGACCATGTTGAAAGAATTCAAACAGTTGAAGAAAGACTATCCTGATAGGATTCTCATTGCTTCCATTATGGAGGAGTATGATAAAGCTGCTTGGGAGGAGCTTATAGAACGAGTAGAAGAAACTGGAGTTGATGCGCTTGAGATTAACTTCTCCTGTCCTCACGGGATGCCTGAGCGCAAGATGGGTGCTGCAGTCGGACAAGACTGTGCTTTATTGGAGGAGGTTTGTGGTTGGGTAAATGAGAAAGCAACAATCCCAGTTTGGGCAAAGATGACTCCAAACGTGACAGATATTGCTGAGCCAGCGAGAGTGGCATTGAGGGCAGGAAGTGAAGGAATTGCGGCTATTAACACAATTATGAGTGTAATGGGAATCAATCTTGACACATTACGGCCTGAACCTTGTGTGGAGGGTTATTCAACCCCGGGTGGATATTCTTCAAAAGCTGTGCATCCAATTGCTCTTGCAAAAGTAATGTCTATTGCACAGATGATGAAGTCCGAGTTTCCTGATCCAACGTTATCACTTTCTGGCATAGGAGGAGTTGAAAATGGAGGTCATGCTGCTGAGTTTATACTGCTTGGAGCAAACACTGTTCAGGTCTGCACTGGGGTCATGATGCATGGTTATGGACTTGCTAAACAACTCTGCTCTGAGCTCAAGGACTTTATGGTGAAGCATAATTTTTCATCTGTTGAAGATTTTCGTGGGCTATCTCTACAATATTTCACGACTCATACAGATTTGGTTCGCCGTCAGCGTGAAGCTATTGAGCAGAGGAAAGCTGTTCGAAAAGGTTTAGCATCTGATAAGGAGTGGACTGGGGATGGCTTTGTCAAAGAGACAGAAGCCATGGTTTCTAACTGA___TTATCAAATGAAACTTTTTGTTGGTTTGCATTTACGTAGATACTATTCAGATGTGAAACTCTCTTTTTATCTTAAAGCTATATGATTAGCAATTGCTCAAAAGGTAAATAGTTCCATTGTACAAATGGACATTTACTCAAAACTGTCTAAATCTATGACCTTTGTAGCTGCCAGCGTAACGTTGCTTTGTGCTCATTTTCAGACTTTGTTGTCACTGTCAGTTATTTGGTTGCAAGTCTTTTACATTAATATATGTGCTTATGGTGACAACATACAGTGAATTCAGAGTTTCTTGATCCAACTGTACTCGGTGGAAATTCACTTGACTCCACAAATTTCTGATATGCAACTATGCTAAAGT

Fln Alignment:

sp_v1.1_unigene26360___MPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDSSKVINVTPRYARLRAGP-NGSAKGEVIGWENIELISDRPLETMLKEFKQLKKDYPDRILIASIMEEYDKAAWEELIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCALLEEVCGWVNEKATIPVWAKMTPNVTDIAEPARVALRAGSEGIAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVHPIALAKVMSIAQMMKSEFPDPTLSLSGIGGVENGGHAAEFILLGANTVQVCTGVMMHGYGLAKQLCSELKDFMVKHNFSSVEDFRGLSLQYFTTHTDLVRRQREAIEQRKAVRKGLASDKEWTGDGFVKETEAMVSN
A9NRT6_______________MPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDSSKVINVTPRYARLRAGGHNGSAKGEVIGWENIELISDRPLETMLKEFKQLKKEYPDRILIASVMEEYDRAAWQELIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCALLEEVCGWVNEKATVPVWAKMTPNVTDIAEPARVALRSGSEGIAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVHPIALAKVMSIAQMMKSEFPDPALSLSGIGGVENGGHAAEFILLGANTVQVCTGVMMHGYGHVKQLCSELKDFMVKHNFSSIEDFRGISLQYFTTHTDLVRRQQEAIQQRKAIRKGLASDKEWTGDGFVKETETMVSN

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1278		12	87		0.992554
1279			12	87	0.992554
1285			87	12	0.992554
1288	87			12	0.992554
1291		12	87		0.992554
1293		12	87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain