SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26335

Length: 1505 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26335

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc transporter protein ZIP1 n=1 Tax=Glycine max RepID=Q941P4_SOYBN	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	zinc transporter protein zip1	-	-	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc/iron permease	IPR003689	-	0.0	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT59

Fln msg:

Fln protein: MACSFTLKFLIVASAIASYSTISVVAAKDENDCSGKENCIDNSTAILPVKIGAIASIVVGITIGVCLPLLGRTFTSVKPDKNTFFVIRAFAAGLFLATAVVYFLPGALKFPTSESSVWRNIPLPGFLAMFTALCTLIVDALATAYSHLKDQEKPTDEGKEPTEDKELGGNGKNSDGHAHGQQVSPLDSRSRHWVISTVLELAIIAQSAVVGISVGGAESSWMVIRALAAAFTLQQFWEGMNLGGCLLQEGFNNRFPVVSSILGFLAGATTGIGLLSSDSSPAVVIVERVFIIGSAGVMVYMCLVDLSAAYLSKSEKQKRGSIQMWGYMAGLLGLGLFFLVI*

Protein Length: 343

Fln nts: GTACATGGGGCGCATATAAGAAATAATTTCCTTTCGGAAAGTCGAGATACTAAAACGGCAGCCCTTATTTGTAGGGAAATACCATCTGAGCGCCGGGTGTTACTGCACCATACCATAAATCCGGTTTCTGAAGTGTTTGAATTAAAATCTGAGGTCTGGATTTGATTTCTCTGTGAAGA_-_ATGGCATGTTCTTTTACCCTGAAATTTCTCATAGTTGCTTCAGCGATAGCGTCTTATTCGACTATTTCTGTGGTTGCTGCTAAAGATGAAAATGATTGCTCCGGGAAAGAAAATTGCATAGACAATTCTACAGCTATCCTTCCTGTGAAGATCGGAGCAATCGCTTCTATTGTTGTGGGGATTACCATTGGGGTGTGTTTGCCTCTCTTAGGCCGAACCTTTACTTCTGTCAAGCCTGACAAAAACACATTTTTTGTGATTAGGGCTTTTGCTGCGGGTCTTTTTCTTGCAACTGCCGTGGTGTACTTTCTTCCTGGCGCCTTAAAGTTTCCTACCAGTGAATCTTCAGTATGGCGCAATATCCCATTGCCAGGGTTTCTAGCCATGTTTACGGCCCTGTGCACACTTATCGTGGATGCTCTGGCTACTGCTTACTCTCATTTGAAAGATCAAGAGAAACCGACTGATGAGGGTAAGGAGCCGACCGAGGATAAAGAGCTTGGAGGTAACGGCAAAAATTCAGACGGTCACGCCCATGGACAACAGGTCTCGCCATTGGACAGCAGGTCTCGCCATTGGGTCATTTCTACGGTTTTAGAATTGGCTATAATTGCTCAGTCAGCTGTTGTTGGAATATCGGTGGGTGGAGCGGAAAGTTCATGGATGGTAATTAGAGCTTTAGCGGCAGCGTTTACACTTCAGCAATTTTGGGAAGGAATGAACCTCGGCGGATGCCTACTTCAGGAGGGTTTCAATAATAGATTTCCAGTTGTTTCATCAATACTTGGCTTTTTGGCGGGTGCTACAACAGGTATTGGACTGCTATCATCCGATAGCAGCCCAGCAGTAGTGATTGTTGAAAGAGTATTTATCATCGGATCCGCTGGAGTTATGGTTTACATGTGTTTGGTGGATCTTTCTGCTGCGTATTTGTCCAAGTCAGAGAAGCAAAAGAGAGGATCGATTCAGATGTGGGGATACATGGCTGGTCTTTTGGGGTTGGGGCTTTTCTTTTTAGTCATCTAA___CGGACTTGAAATTACCATACCATATATATATATATATATATATATATAAATAAACATATTAGGGATCTTAAAGATCATAACAATCCTCTACTCATTATACTAAAATCCTTGATGGTTATCAACTGACAACCAGAATGCACTCTCTTCTCAAGCTTATTAAATTACCATATCTACACTGGCAGATCAGTATTTTTGCTGGTGCTTTGACACATTTAGAAGCTGCCTTTAACACTGGAATCTGGATAAGGCCCCTCACAAGTAGGTCTCAAGAAACTCGATGTGACAGCCAAGGTCACGACG

Fln Alignment:

sp_v1.1_unigene26335___MACSFTLKFLIVASAIASYSTISVVAAKDENDCSGKENCIDNSTAILPVKIGAIASIVVGITIGVCLPLLGRTFTSVKPDKNTFFVIRAFAAGLFLATAVVYFLPGALKFPTSESSVWRNIPLPGFLAMFTALCTLIVDALATAYSHLKDQEKPTDEGKEPTEDKELGGNGKNSDGHAHGQQVSPLDSRSRHWVISTVLELAIIAQSAVVGISVGGAESSWMVIRALAAAFTLQQFWEGMNLGGCLLQEGFNNRFPVVSSILGFLAGATTGIGLLSSDSSPAVVIVERVFIIGSAGVMVYMCLVDLSAAYLSKSEKQKRGSIQMWGYMA
A9NT59_______________MAYSWKMKYIVAVSAIALYSTVSVVAAEEDSDCSGKENCINKSTVILPVKIGAIASIIVGITIGVCLPLLGRTFTSPRPDRNTYFVIRAFAAGLFLATALVQILPDVFESPTRESSSWHNFPLPGFVAMFTSLSILIVDALATGYSHLKNQKNPSDEG------KDLAGNAKDSGGYAHGSNTIDEDSRFRHRVISQVLELAIIAQSAVVGISLGGAENPWMVIRTLVAAFTYQQFLEGMGLGGCLIQEGFNNKFPVVSTISAFLAGVTTGIGLLSSASSPTAGIVERVFNTGSAGILVYMCLVDLFAAFYFKSKMQKRGALEIWAYMA

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
125	33		66		0.997452
127			33	66	0.997452
128			33	66	0.997452
129		66	33		0.997452
130			33	66	0.997452
295			10	90	0.90298
298	90		10		0.90298
301		10	90		0.90298
302	90			10	0.90298
429	80			20	0.995493
430	20			20	0.99255
523	85		14		0.993533
529	88	11			0.923564
532	88		11		0.923564
535	11		88		0.923564
537		11	88		0.923564
538		88		11	0.923564
539	88			11	0.923564
540	88		11		0.923564
541			11	88	0.923564
542	88	11			0.923564
544		88	11		0.923564
545		88		11	0.923564
548		11		88	0.923564
593	11		88		0.923564
698	83		16		0.994512
942	13		86		1.0
992			93	6	0.999264
1009	93		6		0.99903
1014	93			6	0.99903
1019	93			6	0.99903
1025			93	6	0.99903
1198	75	25			0.996473
1208		25		75	0.996473
1230		14		85	0.993533
1444	88		11		0.999937
1447			11	88	0.999937
1448		11	88		0.999937
1450	83	11		5	0.999887
1451		11	5	83	0.999887
1456		88		11	0.999952
1458	11	82	5		0.999919
1461		88	11		0.999952
1464	81		18		1.0
1478	83		16		0.999991
1479	83	16			0.999991
1483			18	81	0.999994
1485		36	63		1.0
1489	11			88	0.923564
1490	11		66		0.999999
1491	88			11	0.923564
1492		71	14	14	0.984337
1494		16	83		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1227	1253	AT AT AT AT AT AT AT AT AT AT AT AT AT A	27

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain