SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26334

Length: 1265 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26334

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ras-related protein Rab7 n=21 Tax=Spermatophyta RepID=RAB7_GOSHI	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	rab7 -family small gtpase	-	-	96%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	96%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NR13

Fln msg:

Fln protein: MSARRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVLKSFDNLNNWRDEFLIQASPSDPENFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNEPEEEIYLPDTIDVNAGRPQRTSGCDC*

Protein Length: 208

Fln nts: ATGGGGACGCCTAAAAAAATCGAAACCCCGCCCAGCTTCGGGTGTACACATAGTGTACCAACTTAATTTAAGCGCCTTGATCAGTGACACCCTGGCATATGCGTAAAAAATATGATTAATAAGACATGATATTAATCCCCAATTTAGTTTTAACGTTAGACGGAACAGGGGGAGCGATCTATTGACCAGAGAGCAGGTTGAGGAGGGCGCAAGTTAAATCAGCTTAGATCTCTTCGACTCCATCTTCATTCAACATAAGCTCGAGCTCATC_-_ATGTCGGCCCGCAGAAGAACTCTGTTAAAGGTTATCATCCTTGGCGATAGCGGGGTTGGTAAAACCTCGCTGATGAATCAATATGTAAATAAGAAATTCAGCAACCAGTATAAAGCAACCATTGGAGCTGACTTCTTGACTAAAGAAGTTCAGTTTGAGGATAGATTGTTCACGTTGCAGATATGGGATACCGCTGGCCAGGAAAGATTTCAGAGCCTTGGTGTTGCCTTCTACCGTGGTGCCGATTGCTGCGTTCTTGTTTACGATGTTAATGTGCTAAAATCATTCGATAACCTAAATAATTGGCGCGATGAATTTCTAATTCAGGCAAGCCCTTCTGATCCGGAGAATTTTCCATTTGTTGTGCTTGGAAATAAAATTGACGTGGATGGTGGGAACAGCAGAGTGGTCTCTGAGAAAAAGGCCAGGGCATGGTGTGCTTCTAAAGGCAACATTCCCTACTTTGAAACTTCTGCAAAAGAAGGCTTTAATGTTGAAGCAGCTTTCCAATGTATAGCCAAGAATGCATTGAAGAATGAGCCCGAAGAGGAAATATATCTTCCGGACACAATTGATGTCAATGCTGGGAGACCACAAAGAACATCAGGATGTGATTGTTAG___TCACCAGGGGATTGTACAAGACTTTGATGCTACAAATAATAGTTTACTTGCATCGTAAGATATCGAACTTGAATCAGGCCTTTGGGGTGTTAATCAAACGTTTATTTGTGTAATCAGTGTAGAGATAGAATTGTACTCTAGTAATGCTCATTAAAAGTTAGATTGTTGTTTTGCAATTTCGCAATTCAGTTCTTCAGTGATGGACTATGAACATTTACTTTGACTCAGATGGTGATTTCTTTCAAATTGCATGTCTCTCGCAAAATATACTACATTTATGTCATTATCCTATTGTGATTATTTGAGAATATGGCTCCAAATTATTATTTGATTGTTTTCCATGAAAATAAAAAGCCAAATGATTCCAAACTCC

Fln Alignment:

sp_v1.1_unigene26334___MSARRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVLKSFDNLNNWRDEFLIQASPSDPENFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNEPEEEIYLPDTIDVNAGRPQRTSGCDC
A9NR13_______________MSARRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVLKSFDNLNNWRDEFLIQASPSDPENFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNEPEEEIYLPDTIDVNAGRPQRTSGCDC

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1155	2	11		86	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain