SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26315

Length: 2963 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene26315
ATGGGGGAACTTCTTAACTTGTGCCTCTTCCTTAATGCATTTGAAAATTTCACTATATACTTTCAAAGGATTTCCTCGCTAAGAAACTGTCCTGGAATATCAACGTTCCCTCTTGCACTTGCTCCTGCTGCGTTCCTTGAAGAATCAATCAGCTGAGTAACATGCTTCTCTAATTTTTGTTTGTTGCGCTGATCGATCCTGGGAATTTTCCTGAGTAGGTCGGTGAAGATTATTTGCAGGAGAAGCTATGGGCCTTGGAAGAGTTGATATGGATGTGGGATCTGATGGCGTCGCGCTTATAACCATCACAAACCCCCCTGTCAATTCATTGTCAGTTGAAGTCTTGCTAGGCTTGAAAGAGAAATATGATGAAGCTTTGCAAAGACATGACGTGAAAGCAATAGTTATTACAGGTTCTAGTGGCAAATTCTGTGGGGGTTTTGATATAGGAACCTTGGGGGGATTACAAGGTGCGGCTGTACAAATTGAAGGAGAACAGTTTAAATTGACAGATGTTTCAGTCAGAATCATAACCGAATTGTTTGAAGATGCAAAGAAACCGTCGGTTGCTGCTATTGACGGTCTTGCGCTTGGTGGTGGACTTGAGATTGCAATGGCTTGCCATGGACGCATAGCTGCACCACAGGCTCAACTTGGGTTGCCTGAACTCCAACTTGGAGTTATCCCTGGTTTTGGTGGTACACAGCGGCTTCCACGCCTAGTGGGCCTTTCAAAGGCACTTGAAATGATACTTTTGTCGAAACCGATCAAATCTGAAGAGGCTAGTGAGTTGGGGCTTGTGGATGCTGTAGTCCCACCTGTGGAATTGCTAAACACAGCTCGTCGCTGGGCATTGGACATTGCAGAGTTTCGAAGGCCTTGGATAAGAAGCCTTTACCGGACCGACAAGTTAGAACCTTTGGGAGAGGCACGTGAAATCCTAAAATTTGCACGAATTCAAGCACAAAAGAGAGCTGCTAATCTCAAACATCCACTTGTTTGCCTCGATGTCATTGAGGAGGGAATTGTATCTGGACCAATGGCCGGCTTGCTAAAGGAAGTAAGTTCTTTTCAGCAACTTCTTCATTCTGATACCGCCAAGTCATTAATTCATGTTTTCTTTGCACAGCGGTCGACATCAAAGGTTCCTGGAGTCACAGATGTAGGCTTAAAGCCAAGAAGAGTCAGAAAGGTAGCTGTTATTGGTGGGGGTTTGATGGGTTCTGGCATAGCCACAGCCCTAATTCTGAGTGGCTATCCTGTGATCCTTAAAGAAGTAAATGATAAATTCCTTCATTCTGGTCTTGAACGAATTAAAGCAAATTTGCAGAGCCGTGTGAATAAAGGAAAAATGAGTCAAGAAAAGTTTGAGAAAATATTGTCCCTGGTGCAGGGTACAGTTGACTACGAAAATTTTAGGAATGTGGATATGGTAATCGAAGCTGTCATTGAAAATGTAGCTCTGAAACAACAAATATTTAGTGATCTCGAGAAACACTGTCCATCACATTGTGTTCTGGCAACGAATACTTCTACACTCGACTTAAACCTGATTGGCCAGAAAACCAATTCACAGGATCGGATTGTTGGTGCACACTTTTTCAGTCCTGCACATATAATGCCTCTTCTCGAAATAGTGCGCACTGAAAAAACATCCCCCCAAGTTATAGTTGATCTCATGGATGTTGGAAAAAAAATTAAGAAGACACCTATAGTGGTTGGGAACTGCACTGGATTTGCAGTTAATCGCATGTTTTTTCCATATACTCAATCAGCTCTACTCTTGACAGACCTTGGTTTAGATGTATATCGAATTGATAAAGCGATTACCAGCTTTGGAATGCCTATGGGTCCATTTAGATTAGCTGATCTTGTTGGGTTTGAGGTTGCAGTAGCAACAGGCATGCAGTATCTAGAACATTTTCCTGAACGTGTTTACAAGTCACTGTTGATACCAATTATGCTCGAAGACAAGCGGGCTGGTGAGAAAACTCGTAAAGGTTTCTATTTGTATGATGATAGACGGAAGGCCCGTCCAGACCCTGAAATCAAAAAATATATTGAGAAGTCGAGGAGCATGGCTGGCTTGATTGCTGATGGCAAACCAATTTCCTTGACGGATAAGGATATAGTTGAGATGGTATTCTTTCCAGTTGTCAATGAAGCTTGCCGGGTTCTAGGTGAGGGAATCACGGTTCAAGCTTCAGACCTTGATATTGCCTCTGTAATGGGCATGGGATTCCCACCCTACAGGGGCGGTGTTATGTTCTGGGCAGATTCTCTTGGATCAAATTACATTTATTCCAAATTGAAGATCTGGGCTGAGTCATATGGTGATTTTTTTAAACCCTGCCCATTCTTAGAAGAAAGAGCAGCCACTGGGTCTAAACTGAGTGCCCCAGTAAAAAGTATCAAGTCTCGATTATAATTATGGACAACAGTTCAGAGAATCTCATAAAGAATGTCTGCTGGAGATTCTGGATGAGAGTAATGCTTATTTTTGTATTGGTGATATCTTGTCACCTTACAATTTAATCTCCAGTGATCAGATTGATGATTTATAGTTCAGGGAATTTCGTTGGAGATGACAATGGGATCGTATTGCAGCACAGAGTTTCATCCTGTCAGTCGATATAATATTTGGCTATACAGTATTGGTTGAAACTTGGGTATTAGTGAATATTTCTAGACTAACTCAGGTATTAGCGGGTAGTTCTAGGTTTTTCATTCCTTTACGATGTTTTCAATATATCTGTAGTACGTAAATTTTATTAGTTTATGAATGTTATTGGGCTTGAGTAAAAAAAATGCTTGAAGGATAAAAAGAACCTAATTACGTCTTTTAACAATTGGCCAATATGAGAATTATTCGAGATTACTCTTCATGGTTACTCTTTGTTGGATTAACTGTAAAAACGAAGTGATATATTTGTTAAAATGCATGGAAATAATTCGTATGTTAC

Ace file of the UniGene sp_v1.1_unigene26315

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	tetrafunctional protein of glyoxysomal fatty acid beta-oxidation	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	3-hydroxyacyl-CoA dehydrogenase.	EC:1.1.1.35	-	0.0	84%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid elongation in mitochondria	00062		84%
Blast2go	Fatty acid metabolism	00071		84%
Blast2go	Primary bile acid biosynthesis	00120		84%
Blast2go	Valine, leucine and isoleucine degradation	00280		84%
Blast2go	Geraniol degradation	00281		84%
Blast2go	Lysine degradation	00310		84%
Blast2go	Tryptophan metabolism	00380		84%
Blast2go	Toluene degradation	00623		84%
Blast2go	Butanoate metabolism	00650		84%
Blast2go	Carbon fixation pathways in prokaryotes	00720		84%
Blast2go	Biosynthesis of plant hormones	01070		84%
Blast2go	Metabolic pathways	01100		84%
Blast2go	Biosynthesis of secondary metabolites	01110		84%
Blast2go	Dodecenoyl-CoA isomerase.	EC:5.3.3.8	-	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid metabolism	00071		0.0	84%
Blast2go	Enoyl-CoA hydratase.	EC:4.2.1.17	-	0.0	84%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid elongation in mitochondria	00062		84%
Blast2go	Fatty acid metabolism	00071		84%
Blast2go	Valine, leucine and isoleucine degradation	00280		84%
Blast2go	Geraniol degradation	00281		84%
Blast2go	Lysine degradation	00310		84%
Blast2go	Benzoate degradation	00362		84%
Blast2go	Tryptophan metabolism	00380		84%
Blast2go	beta-Alanine metabolism	00410		84%
Blast2go	alpha-Linolenic acid metabolism	00592		84%
Blast2go	Aminobenzoate degradation	00627		84%
Blast2go	Propanoate metabolism	00640		84%
Blast2go	Butanoate metabolism	00650		84%
Blast2go	Limonene and pinene degradation	00903		84%
Blast2go	Biosynthesis of unsaturated fatty acids	01040		84%
Blast2go	Biosynthesis of plant hormones	01070		84%
Blast2go	Metabolic pathways	01100		84%
Blast2go	Biosynthesis of secondary metabolites	01110		84%
Blast2go	3-hydroxybutyryl-CoA epimerase.	EC:5.1.2.3	-	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid metabolism	00071		0.0	84%
Blast2go	Butanoate metabolism	00650		0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	84%
Blast2go	3-hydroxyacyl-CoA dehydrogenase activity	GO:0003857	Molecular Function	84%
Blast2go	3-hydroxyacyl-CoA dehydratase activity	GO:0018812	Molecular Function	84%
Blast2go	dodecenoyl-CoA delta-isomerase activity	GO:0004165	Molecular Function	84%
Blast2go	enoyl-CoA hydratase activity	GO:0004300	Molecular Function	84%
Blast2go	3-hydroxybutyryl-CoA epimerase activity	GO:0008692	Molecular Function	84%
Blast2go	peroxisome	GO:0005777	Cellular Component	84%
Blast2go	cell wall	GO:0005618	Cellular Component	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV15

Fln msg:

Fln protein: MGLGRVDMDVGSDGVALITITNPPVNSLSVEVLLGLKEKYDEALQRHDVKAIVITGSSGKFCGGFDIGTLGGLQGAAVQIEGEQFKLTDVSVRIITELFEDAKKPSVAAIDGLALGGGLEIAMACHGRIAAPQAQLGLPELQLGVIPGFGGTQRLPRLVGLSKALEMILLSKPIKSEEASELGLVDAVVPPVELLNTARRWALDIAEFRRPWIRSLYRTDKLEPLGEAREILKFARIQAQKRAANLKHPLVCLDVIEEGIVSGPMAGLLKEVSSFQQLLHSDTAKSLIHVFFAQRSTSKVPGVTDVGLKPRRVRKVAVIGGGLMGSGIATALILSGYPVILKEVNDKFLHSGLERIKANLQSRVNKGKMSQEKFEKILSLVQGTVDYENFRNVDMVIEAVIENVALKQQIFSDLEKHCPSHCVLATNTSTLDLNLIGQKTNSQDRIVGAHFFSPAHIMPLLEIVRTEKTSPQVIVDLMDVGKKIKKTPIVVGNCTGFAVNRMFFPYTQSALLLTDLGLDVYRIDKAITSFGMPMGPFRLADLVGFEVAVATGMQYLEHFPERVYKSLLIPIMLEDKRAGEKTRKGFYLYDDRRKARPDPEIKKYIEKSRSMAGLIADGKPISLTDKDIVEMVFFPVVNEACRVLGEGITVQASDLDIASVMGMGFPPYRGGVMFWADSLGSNYIYSKLKIWAESYGDFFKPCPFLEERAATGSKLSAPVKSIKSRL*

Protein Length: 728

Fln nts: ATGGGGGAACTTCTTAACTTGTGCCTCTTCCTTAATGCATTTGAAAATTTCACTATATACTTTCAAAGGATTTCCTCGCTAAGAAACTGTCCTGGAATATCAACGTTCCCTCTTGCACTTGCTCCTGCTGCGTTCCTTGAAGAATCAATCAGCTGAGTAACATGCTTCTCTAATTTTTGTTTGTTGCGCTGATCGATCCTGGGAATTTTCCTGAGTAGGTCGGTGAAGATTATTTGCAGGAGAAGCT_-_ATGGGCCTTGGAAGAGTTGATATGGATGTGGGATCTGATGGCGTCGCGCTTATAACCATCACAAACCCCCCTGTCAATTCATTGTCAGTTGAAGTCTTGCTAGGCTTGAAAGAGAAATATGATGAAGCTTTGCAAAGACATGACGTGAAAGCAATAGTTATTACAGGTTCTAGTGGCAAATTCTGTGGGGGTTTTGATATAGGAACCTTGGGGGGATTACAAGGTGCGGCTGTACAAATTGAAGGAGAACAGTTTAAATTGACAGATGTTTCAGTCAGAATCATAACCGAATTGTTTGAAGATGCAAAGAAACCGTCGGTTGCTGCTATTGACGGTCTTGCGCTTGGTGGTGGACTTGAGATTGCAATGGCTTGCCATGGACGCATAGCTGCACCACAGGCTCAACTTGGGTTGCCTGAACTCCAACTTGGAGTTATCCCTGGTTTTGGTGGTACACAGCGGCTTCCACGCCTAGTGGGCCTTTCAAAGGCACTTGAAATGATACTTTTGTCGAAACCGATCAAATCTGAAGAGGCTAGTGAGTTGGGGCTTGTGGATGCTGTAGTCCCACCTGTGGAATTGCTAAACACAGCTCGTCGCTGGGCATTGGACATTGCAGAGTTTCGAAGGCCTTGGATAAGAAGCCTTTACCGGACCGACAAGTTAGAACCTTTGGGAGAGGCACGTGAAATCCTAAAATTTGCACGAATTCAAGCACAAAAGAGAGCTGCTAATCTCAAACATCCACTTGTTTGCCTCGATGTCATTGAGGAGGGAATTGTATCTGGACCAATGGCCGGCTTGCTAAAGGAAGTAAGTTCTTTTCAGCAACTTCTTCATTCTGATACCGCCAAGTCATTAATTCATGTTTTCTTTGCACAGCGGTCGACATCAAAGGTTCCTGGAGTCACAGATGTAGGCTTAAAGCCAAGAAGAGTCAGAAAGGTAGCTGTTATTGGTGGGGGTTTGATGGGTTCTGGCATAGCCACAGCCCTAATTCTGAGTGGCTATCCTGTGATCCTTAAAGAAGTAAATGATAAATTCCTTCATTCTGGTCTTGAACGAATTAAAGCAAATTTGCAGAGCCGTGTGAATAAAGGAAAAATGAGTCAAGAAAAGTTTGAGAAAATATTGTCCCTGGTGCAGGGTACAGTTGACTACGAAAATTTTAGGAATGTGGATATGGTAATCGAAGCTGTCATTGAAAATGTAGCTCTGAAACAACAAATATTTAGTGATCTCGAGAAACACTGTCCATCACATTGTGTTCTGGCAACGAATACTTCTACACTCGACTTAAACCTGATTGGCCAGAAAACCAATTCACAGGATCGGATTGTTGGTGCACACTTTTTCAGTCCTGCACATATAATGCCTCTTCTCGAAATAGTGCGCACTGAAAAAACATCCCCCCAAGTTATAGTTGATCTCATGGATGTTGGAAAAAAAATTAAGAAGACACCTATAGTGGTTGGGAACTGCACTGGATTTGCAGTTAATCGCATGTTTTTTCCATATACTCAATCAGCTCTACTCTTGACAGACCTTGGTTTAGATGTATATCGAATTGATAAAGCGATTACCAGCTTTGGAATGCCTATGGGTCCATTTAGATTAGCTGATCTTGTTGGGTTTGAGGTTGCAGTAGCAACAGGCATGCAGTATCTAGAACATTTTCCTGAACGTGTTTACAAGTCACTGTTGATACCAATTATGCTCGAAGACAAGCGGGCTGGTGAGAAAACTCGTAAAGGTTTCTATTTGTATGATGATAGACGGAAGGCCCGTCCAGACCCTGAAATCAAAAAATATATTGAGAAGTCGAGGAGCATGGCTGGCTTGATTGCTGATGGCAAACCAATTTCCTTGACGGATAAGGATATAGTTGAGATGGTATTCTTTCCAGTTGTCAATGAAGCTTGCCGGGTTCTAGGTGAGGGAATCACGGTTCAAGCTTCAGACCTTGATATTGCCTCTGTAATGGGCATGGGATTCCCACCCTACAGGGGCGGTGTTATGTTCTGGGCAGATTCTCTTGGATCAAATTACATTTATTCCAAATTGAAGATCTGGGCTGAGTCATATGGTGATTTTTTTAAACCCTGCCCATTCTTAGAAGAAAGAGCAGCCACTGGGTCTAAACTGAGTGCCCCAGTAAAAAGTATCAAGTCTCGATTATAA___TTATGGACAACAGTTCAGAGAATCTCATAAAGAATGTCTGCTGGAGATTCTGGATGAGAGTAATGCTTATTTTTGTATTGGTGATATCTTGTCACCTTACAATTTAATCTCCAGTGATCAGATTGATGATTTATAGTTCAGGGAATTTCGTTGGAGATGACAATGGGATCGTATTGCAGCACAGAGTTTCATCCTGTCAGTCGATATAATATTTGGCTATACAGTATTGGTTGAAACTTGGGTATTAGTGAATATTTCTAGACTAACTCAGGTATTAGCGGGTAGTTCTAGGTTTTTCATTCCTTTACGATGTTTTCAATATATCTGTAGTACGTAAATTTTATTAGTTTATGAATGTTATTGGGCTTGAGTAAAAAAAATGCTTGAAGGATAAAAAGAACCTAATTACGTCTTTTAACAATTGGCCAATATGAGAATTATTCGAGATTACTCTTCATGGTTACTCTTTGTTGGATTAACTGTAAAAACGAAGTGATATATTTGTTAAAATGCATGGAAATAATTCGTATGTTAC

Fln Alignment:

sp_v1.1_unigene26315___MGLGRVDMDVGSDGVALITITNPPVNSLSVEVLLGLKEKYDEALQRHDVKAIVITGSSGKFCGGFDIGTLGGLQGAAVQIEGEQFKLTDVSVRIITELFEDAKKPSVXXXXXXXXXXXXXXXMACHGRIAAPQAQLGLPELQLGVIPGFGGTQRLPRLVGLSKALEMILLSKPIKSEEASELGLVDAVVPPVELLNTARRWALDIAEFRRPWIRSLYRTDKLEPLGEAREILKFARIQAQKRAANLKHPLVCLDVIEEGIVSGPMAGLLKEVSSFQQLLHSDTAKSLIHVFFAQRSTSKVPGVTDVGLKPRRVRKVAVIGGGLMGSGIATALILSGYPVILKEVNDKFLHSGLERIKANLQSRVNKGKMSQEKFEKILSLVQGTVDYENFRNVDMVIEAVIENVALKQQIFSDLEKHCPSHCVLATNTSTLDLNLIGQKTNSQDRIVGAHFFSPAHIMPLLEIVRTEKTSPQVIVDLMDVGKKIKKTPIVVGNCTGFAVNRMFFPYTQSALLLTDLGLDVYRIDKAITSFGMPMGPFRLADLVGFEVAVATGMQYLEHFPERVYKSLLIPIMLEDKRAGEKTRKGFYLYDDRRKARPDPEIKKYIEKSRSMAGLIADGKPISLTDKDIVEMVFFPVVNEACRVLGEGITVQASDLDIASVMGMGFPPYRGGVMFWADSLGSNYIYSKLKIWAESYGDFFKPCPFLEERAATGSKLSAPVKSIKSRL
A9NV15_______________MGKGGVDIEVGSDGVALITITNPPVNSLSVDVLLGLKEKYDEALQRDDVKAIVITGSGGKFCGGFDIGTLGGLQHGAVKIGGEQFELTDVSVKIITELFEGAKKPSVAAIDGLALGGGLEIAMACHGRIAAPQAQLGLPELQLGVIPGFGGTQRLPRLVGLSKALEMILLSKPIKSEEASELGLVDAVVPPLELLNSARRWALDIAEFRRPWIRSLYRTDKLEPLGEAREILKFARIQAQKRAANLKHPLVCLDVIEEGIVSGPMAGLVKEVSSFQQLLHSDNAKALIHVFFSQRLTSKVPGVTDVGLKPRRVRKVAVLGGGLMGSGIATALILSGYPVILKEVNDRFLQAGLERIKANLQSRVNKGKMSQEKFEKIFSLVHGTVDYENFRNVDIVIEAVIENVALKQQIFSDLEKFCPPHCVLATNTSTIDLSLIGQKTNSQDRIVGAHFFSPAHIMPLLEIVRTEKTSPQVIVDLMDVGKKIKKTPIVVGNCTGFAVNRMFFPYTQSALFLTDLGLDVYRIDIVITSFGMPMGPFRLADLVGFEVAVATGMQYLENFPERVYKSLLIPIMLEDKRAGEKTRKGFYLYDDRRKARPDPEIKKYIEKSRSMAGLIADGKPLSLMDKDIVEMVFFPVVNEACRVLGEGITVQASDLDIASVMGMGFPPYRGGVMFWADSLGSNYIYSKLKIWAESYGDFFKPCPFLEERAATGSKLSAPVKSIKSRL

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
245		25	75		0.996473
246		75	25		0.996473
247		25		75	0.996473
248	75			25	0.996473
249	25			75	0.996473
250			75	25	0.996473
765		80		20	0.995493
1583	90		10		0.90298
1833			85	14	0.993533
1834		85	14		0.993533
1835			14	85	0.993533
1836			14	85	0.993533
1940	90		10		0.90298
2541	92	4			0.98868
2544		4	95		0.997494
2545	95		4		0.997494
2549		4	95		0.997494
2550	92	4	2		0.98868
2554	92	4			0.98868
2559		4		95	0.997494
2560	4	2		92	0.98868
2561	95	4			0.997494
2594			95	4	0.995055
2962	75	25			0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain