SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26312

Length: 1756 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26312

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.30)	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	71%
Blast2go	serine threonine-protein kinase	-	-	81%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	81%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	81%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	81%
Blast2go	Protein kinase-like domain	IPR011009	-	81%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	81%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	81%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D8S910

Fln msg:

Fln protein: MVRSLQEISSTDHVETGNGENRRESIALVVIVVMASLAVVALLVAFSYYWYIKNKVKKRFNTEKSLQQSNELAPPVMNSSSQTEAQVFTFKQLQAATSNFSSNNVIGNGGFGSVYKGVLQDSSKVAIKQLDQASKQGEQEFRVEVDVLSCLHSPYLLALIGYCADHDHRLLVYEFMPNGSLQEHLYSDGSPSNPPKLDWDTRMRIALDAARGLEYLHECIDPPVIHRDFKSSNILLDRNYHAKVSDFGLAKLGSDKVGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPPGQGVLVSWALPQLTDREKLVQIIDPVLEGQFSMKELIQVAAIAAMCIQPEADYRPLMADVVQSLVPLVKHHRPSSRVVSTPNLHHNIVTLKSSSMDSGSSSAAND*

Protein Length: 418

Fln nts: ATTGGGCAACAAGTCCCCTCTCGCAATTCATGGGTACAGAGACTCGTGTGGAAGCCTAGTCTGCAGACCCACATTGGCCTTCTGAGACATTAGCCTTTTGAGTTTGGCATTTGGGCTTTTGCTGTCTTATGTAGAAATACAAATAAGCCCAC_-_ATGGTTCGCTCTCTGCAGGAAATCAGCAGCACAGATCATGTTGAAACCGGGAATGGGGAAAACAGGCGGGAGAGTATTGCTCTGGTTGTTATTGTTGTCATGGCCTCCCTTGCAGTGGTGGCGTTGTTGGTGGCCTTCAGCTACTATTGGTACATTAAGAACAAAGTCAAGAAGAGGTTCAACACTGAAAAATCCCTTCAGCAAAGCAACGAACTTGCCCCTCCTGTGATGAACTCATCATCCCAGACAGAGGCACAAGTCTTTACATTCAAGCAACTCCAAGCAGCAACCAGTAATTTCAGCTCAAACAATGTTATTGGCAATGGAGGCTTTGGCTCTGTGTATAAAGGAGTGCTGCAGGATAGTAGTAAGGTTGCTATCAAGCAGCTTGACCAAGCAAGCAAACAGGGAGAACAAGAATTTCGTGTGGAGGTTGATGTTTTGAGCTGTCTCCATTCACCATACTTGCTTGCATTGATTGGGTACTGTGCAGACCATGATCACAGACTCTTAGTGTATGAGTTCATGCCCAATGGAAGCCTGCAAGAGCACCTTTACTCTGATGGTTCTCCTAGCAACCCTCCAAAGTTGGATTGGGACACCAGAATGAGAATAGCTCTGGATGCGGCAAGAGGACTTGAATACTTGCACGAGTGTATTGATCCTCCAGTGATTCACAGGGACTTCAAAAGCAGTAATATTCTCCTAGACAGAAATTATCATGCCAAAGTCTCAGATTTTGGCTTGGCCAAACTTGGGTCTGATAAAGTAGGAGGCCATGTGTCTACTCGAGTTTTGGGAACACAAGGATATGTTGCCCCCGAGTATGCATTGACAGGACACTTGACTACTAAATCAGATGTTTACAGCTATGGAGTTGTATTACTGGAACTCTTAACTGGAAGAGTTCCAGTGGACATGAAAAGGCCGCCTGGTCAAGGTGTCCTTGTATCTTGGGCTCTACCTCAGCTTACAGATAGAGAAAAATTGGTTCAGATTATAGACCCTGTGTTGGAGGGTCAATTCTCCATGAAGGAGCTCATTCAGGTTGCTGCAATAGCTGCAATGTGTATCCAACCTGAAGCAGATTATAGGCCTTTAATGGCAGATGTGGTGCAATCTTTGGTTCCTCTTGTGAAGCATCATCGACCATCATCCAGGGTGGTCAGCACTCCTAATTTACATCATAACATTGTAACTCTCAAGTCTTCCTCCATGGACAGTGGTAGCAGCAGTGCTGCCAATGACTAA___TGTCTAGTCACTGAAACCATTGGCGCATCAGTTCTATGTATCAGACAGATCTCTGGCCAGTTCATTTTTGAGGGGATAGCTTTTAACCATAGGCCGTAGTATTAAAATTGAGAGGCGTTTGCCCATGTGATTTGCAAGCTTTAATGTTCATCTTTTCACAATTAATGAAGTGGCATGGAATTTTTGATCATCGCCGAGCTCTGTATCAAAGAAATAGCATATATTTGGTATTATATAATGCTAATTTATGCAAACTGAAAGTATGCATACAACTTAGCCAGTGGAGCAACAATGGCCCATGGGTGTTGGCAATTCCATTAACTGCATAATATTCGAATATTTTAATATAATTT

Fln Alignment:

sp_v1.1_unigene26312___FSYYWYIKNKVKKRFNTEKSLQQSNELAPPVMNSSSQTEAQVFTFKQLQAATSNFSSNNVIGNGGFGSVYKGVLQDSSKVAIKQLDQASKQGEQEFRVEVDVLSCLHSPYLLALIGYCADHDHRLLVYEFMPNGSLQEHLYSDGSPSNPPKLDWDTRMRIALDAARGLEYLHECIDPPVIHRDFKSSNILLDRNYHAKVSDFGLAKLGSDKVGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPPGQGVLVSWALPQLTDREKLVQIIDPVLEGQFSMKELIQVAAIAAMCIQPEADYRPLMADVVQSLVPLVKHHRPSSRVVSTPNLHHNIVTLK
D8S910_______________FAYYCYLRHKAR-------APRQEGTY------NGSTSEAQVFTYKQMQAATNNFTTSNEVGQGGFGSVFRGVLPDGRTAAIKQLDRGGKQGDREFRVEVDMLSRLHSPHLLELIGYCADQEHRLLVYEFMPNGSVQEHLHSDGTSGRPPMLDWDTRMRVALDAARGLEYLHEMVSPPIIHRDFKSSNILLNDKYNAKVSDFGLAKLGSDKAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSFGVVLLELLTGRVPVDMKRPPGEGVLVSWALPRLTDRNKMVEIIDPRLNGQFAMKDLIQIAAIAAMCVQPEADYRPFITDVVQSLVPLIKHNRP-MRVLSSPSFLHAIVTVK

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
511	12		87		0.992554
600		11	88		0.923564
604			11	88	0.923564
607		88		11	0.923564
610		11		88	0.923564
879	20		80		0.995493
1107		10		90	0.90298
1108		90		10	0.90298
1110		10		90	0.90298
1191			88	11	0.923564
1208	22			77	0.999999
1227	88		11		0.923564
1267		12		87	0.992554
1268	12		87		0.992554
1269		12	87		0.992554
1329		94	5		0.998894
1332	93		6		0.99903
1334		6		93	0.99903
1337	84		3	3	0.999999
1485	60		40		1.0
1516		40	60		1.0
1679	20	80			0.995493
1681			20	80	0.995493
1682	80		20		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain