SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26290

Length: 1442 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26290

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Valacyclovir hydrolase, putative n=1 Tax=Ricinus communis RepID=B9RK77_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	protein	-	-	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	BAAT/Acyl-CoA thioester hydrolase C-terminal	IPR014940	-	0.0	74%
Blast2go	Alpha/beta hydrolase, N-terminal	IPR022742	-	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMV8

Fln msg:

Fln protein: MADSNSAQTQNPSSVQERITLPNKHGEKLVGVLDDTGSRQLVVLCHGFRSSKESDTLVNLAAALVSEGISVFRFDFSGNGESEGQFLYGNYWKDAEDLRVVVLYFRGKGHKVNTIIGHSKGGNAVLLYASKYQDISTAINISGRFALDRGIEGRLGKDFKHRIIQYGFIDVKDKSGNVLYRVTKESLMDRLLTDTKSAVLSIPKSCRVLTIHGSRDEIVPVTNAFEFDKFIANHQLHVIDEADHNYTCHQNEVAYVVLKFIKASWEASTEKIDHSVPCPTRGNIVSCKL*

Protein Length: 291

Fln nts: CCCCACAATTGATACACGTAAATATAGCCAGTCTACCATCGTCAGTTTCGGCAATCCCAGGAGGACAGGGCAGCTCAAGCATCGGATCACG_-_ATGGCGGACAGCAATTCAGCACAAACACAAAATCCATCTTCAGTGCAGGAGCGAATCACATTACCAAACAAGCATGGAGAGAAATTGGTGGGAGTATTAGATGATACTGGCTCAAGACAACTTGTTGTCCTTTGCCATGGATTTCGATCATCAAAGGAAAGTGACACTCTGGTTAATCTGGCAGCTGCATTAGTAAGTGAAGGAATTAGTGTCTTTCGCTTTGACTTTTCTGGAAATGGGGAAAGTGAAGGCCAGTTTTTATATGGAAACTATTGGAAGGATGCTGAAGATCTACGAGTTGTAGTTCTCTATTTTAGGGGGAAGGGACATAAAGTTAACACTATCATTGGGCACAGCAAAGGTGGCAATGCCGTGTTGCTTTATGCTTCCAAGTATCAGGATATTAGCACTGCAATCAATATCAGTGGACGATTTGCTTTGGATAGAGGCATAGAGGGTCGCTTGGGTAAAGATTTCAAGCATAGGATCATTCAATATGGATTTATTGATGTAAAGGACAAGTCTGGGAATGTGTTATACCGTGTGACAAAAGAGAGTTTAATGGATCGGTTACTTACTGATACAAAATCAGCAGTACTTTCTATCCCTAAAAGTTGCAGGGTCTTGACTATTCATGGCTCCAGGGATGAGATTGTTCCTGTAACAAACGCATTTGAATTTGATAAGTTTATTGCAAATCACCAGCTTCATGTTATTGACGAAGCAGATCATAATTATACCTGCCATCAGAATGAAGTAGCATATGTTGTTCTAAAATTCATTAAGGCTAGTTGGGAGGCATCTACTGAAAAAATAGATCACTCAGTGCCTTGTCCAACAAGAGGGAACATAGTTTCTTGCAAACTATGA___TTTTCTCTCAAAATTCTCAATAAATGAGCAAAGTAATATTTAGACTAGAAATAACATTGACGGTATAGCTAAATTTCTGTGTCCCTATTTGTTATTGATCATGTCAGCAAAATAATCATTATTTTTCTGAGACATGGATGCAAAATAGTTCATCCCATTCCTAACTTGGTTGATTCTTATGTTGGTAGGTACACATATAGTTGTTAAGAAATGCTTCCATCCCCTAATGTTTACTCTACCATCCATGAATATTGATGGCTTTTATAGTCCAAATCACTGCTACCTTGAGGACTTGGTTGTGATCTAATAAAGGTTTTATTGAACTAGGCAAGACCTATGTATCATATTTAAGCATTGCATATTGTAATGTACCTATATTCATAAAGACAGCATCATCATTATCATGAAAAATAACAAATATTGAGCATGTAAATAAACAAGTGAAACCACAACATCTAAACATGCATAGCTATATATGTCC

Fln Alignment:

sp_v1.1_unigene26290___MADSNSAQTQNPSS--VQERITLPNKHGEKLVGVLDDTGSRQLVVLCHGFRSSKESDTLVNLAAALVSEGISVFRFDFSGNGESEGQFLYGNYWKDAEDLRVVVLYFRGKGHKVNTIIGHSKGGNAVLLYASKYQDISTAINISGRFALDRGIEGRLGKDFKHRIIQYGFIDVKDKSGNVLYRVTKESLMDRLLTDTKSAVLSIPKSCRVLTIHGSRDEIVPVTNAFEFDKFIANHQLHVIDEADHNYTCHQNEVAYVVLKFIK
A9NMV8_______________MADGNSAQTQNRSSLVVQERITLTNKHGEKLVGVLDDTGSRQLVVLCHGFRSSKESGTLVNLAAALVSEGISAFRFDFSGNGESEGQFLYGGYWKEVEDLHTVILYFSGKERQMNTIIGHSKGGNVVLLYASKYHDISTVINISGRYALDKGIEDRMGKDFERRINKDGFIDVKNSSGNVEYRVTKEGLMDRLQTDMKSAALSIPKNCRVLTIHGSEDETIPVTDAFEFDKLITNHVLHVMDGADHCYNFHQNELASVVLKFMK

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
755	80	20			0.995493
757	66	16		16	0.988813
758	66	16	16		0.988813
759	66		16	16	0.988813
760		83		16	0.994512
762	16	66	16		0.988813
763	83	16			0.994512
764		33		66	1.0
768	66		33		1.0
769	66	33			1.0
771			33	66	1.0
773		33	66		1.0
833		12		87	0.992554
835		87		12	0.992554
837	87		12		0.992554
839		87	12		0.992554
841		12	87		0.992554
842	87	12			0.992554
843	87			12	0.992554
846	87	12			0.992554
847	87			12	0.992554
851			87	12	0.992554
876	88	11			0.923564
878			88	11	0.923564
882		11	88		0.923564
887		11	88		0.923564
888	88			11	0.923564
890			88	11	0.923564
895	11			88	0.923564
1088		90		10	0.90298
1100		10		90	0.90298
1268	80		20		0.995493
1284	75		25		0.996473
1289		25	75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain