SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26284

Length: 534 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene26284
CGTGACCTTGGCTGTCACTCAATTCCGACTTGCAGGGAGTTGGGAATAGGAATTGTACCTTATAGTCCTCTAGGACGTGGATTTTTTGCTGGGAAAGCAATTGTTGAAAGCTTACATGAGGGTGATAGTAGACTGGTTCGGCAACCCAGGTTTCAGGGTGAGAACTTGAAGAAGAATATGGTATTATATGAACGAGTTTCTGCTTTAGCTAAGAAGCATGGGTGCACGCCTGCACAACTGGCCCTCGCATGGGTACTTCATCAAGGAAATGATGTTGCTCCAATTCCAGGAACAACCAAAGTAAAAAATTTTGATGAAAATATTGCATCTTTGGAGATTAGTTTATCCCAGGAAGAACTGAGTGAGATTGCTGCAGCTGTTCCTGAAAATGAGGTTGCAGGAATGAGGGCTGCTGATCCTAATTATCAAAGGACATGGAAGTTCGCCAATACAACCCCAACCAAAGCAGACTTGATGGTTGCAAGGGAAAATTCTATGCTCGGCTGTTGTACCCTTTTCTCTAAGATTTGAGAC

Ace file of the UniGene sp_v1.1_unigene26284 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	aldo/keto reductase, putative (EC:1.1.1.65)	-	-	3.0e-39	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	protein	-	-	0.0	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQX2

Fln msg: your sequence is shorter than subject: 177 - 339

Fln protein: RDLGCHSIPTCRELGIGIVPYSPLGRGFFAGKAIVESLHEGDSRLVRQPRFQGENLKKNMVLYERVSALAKKHGCTPAQLALAWVLHQGNDVAPIPGTTKVKNFDENIASLEISLSQEELSEIAAAVPENEVAGMRAADPNYQRTWKFANTTPTKADLMVARENSMLGCCTLFSKI*

Protein Length: 178

Fln nts: CGTGACCTTGGCTGTCACTCAATTCCGACTTGCAGGGAGTTGGGAATAGGAATTGTACCTTATAGTCCTCTAGGACGTGGATTTTTTGCTGGGAAAGCAATTGTTGAAAGCTTACATGAGGGTGATAGTAGACTGGTTCGGCAACCCAGGTTTCAGGGTGAGAACTTGAAGAAGAATATGGTATTATATGAACGAGTTTCTGCTTTAGCTAAGAAGCATGGGTGCACGCCTGCACAACTGGCCCTCGCATGGGTACTTCATCAAGGAAATGATGTTGCTCCAATTCCAGGAACAACCAAAGTAAAAAATTTTGATGAAAATATTGCATCTTTGGAGATTAGTTTATCCCAGGAAGAACTGAGTGAGATTGCTGCAGCTGTTCCTGAAAATGAGGTTGCAGGAATGAGGGCTGCTGATCCTAATTATCAAAGGACATGGAAGTTCGCCAATACAACCCCAACCAAAGCAGACTTGATGGTTGCAAGGGAAAATTCTATGCTCGGCTGTTGTACCCTTTTCTCTAAGATTTGA___GAC

Fln Alignment:

sp_v1.1_unigene26284___RDLGCHSIPTCRELGIGIVPYSPLGRGFFAGKAIVESLHEGDSRLVRQPRFQGENLKKNMVLYERVSALAKKHGCTPAQLALAWVLHQGNDVAPIPGTTKVKNFDENXXXXXXXXXXXXXXXXXXAVPENEVAGMRAADPNYQRTWKFANT
C0PQX2_______________RDIEESIVPVCRELGIGIVPYSPLGRGFFSGKAVVESLPENSS-LVSHPRFKGENLEKNKIFYTHIANLAKKHGCTPGQLALAWVLHQGDDVIPIPGTTKAKNLDENIGSLNVELSQQDLEEIVGSLPVDEVAGLRTYESMYHKSWIFSDT

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain