SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26283

Length: 1290 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26283

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S4, putative; K02987 small subunit ribosomal protein S4e	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	40s ribosomal protein s4	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	nucleolus	GO:0005730	Cellular Component	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNW1

Fln msg:

Fln protein: MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSPGPHKGRECLPLVVLLRNRLKYALTYREVIAIVMQRLISVDGKVRTDKCYPAGFMDVLKTNENFSLH*NKKEEAKYKLCKVRSVQFGDKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETGKIMEFIKFDVGNVIMVTGGRNRGRVGVIKHREKHKGSFEIIHVQDAAGQEFATRQGNVFTIGKGTKPWVSLPKGKGVKLSIIEEARKRHAAGTAAA*

Protein Length: 252

Fln nts: ATGGGGAAGTTTAGAGGTAAAAGCGCAACTAGGGTTTGGTAAAGGGTATAGGGTTTCAAAGAGTTAAGCCCGTGTTTGAACCCTCAAGATCCTTGATTGGCTGGGTTCATTGATTTCTGCTCCTCCTACTGAATCGATCGTAGAGGTCTTTGCCTCTGTAATTTGATTTGCAGAAGGTGCCTGGCAGGGTTTAAGGATTTCTCATTCTCCTCTTCTTGAGCCGATCGTAGAGACATC_-_ATGGCTCGTGGATTGAAGAAACATTTAAAGAGGCTCAATGCACCTAGGCATTGGATGCTTGACAAACTCGGTGGTGCTTTTGCACCAAAACCATCTCCTGGTCCTCACAAGGGGAGGGAATGCCTTCCTCTTGTTGTTCTTCTTAGGAATAGGCTGAAGTATGCTCTCACATACCGTGAAGTCATAGCCATTGTAATGCAAAGGCTTATATCTGTTGATGGAAAAGTCAGGACAGACAAATGCTATCCTGCAGGGTTTATGGATGTCCTGAAAACAAATGAGAATTTTAGCCTGCATTAAAACAAAAAGGAAGAAGCAAAGTATAAACTTTGCAAGGTTCGTTCTGTACAATTTGGAGATAAGGGTATCCCTTACCTCAATACTTATGATGGACGCACAATTAGGTACCCAGACCCATTGATCAAGGCCAATGATACAATTAAGCTTGACCTAGAGACGGGCAAGATCATGGAGTTCATAAAGTTTGATGTTGGTAATGTTATAATGGTTACTGGAGGCCGCAATAGAGGTCGTGTTGGAGTCATTAAGCACAGAGAAAAGCACAAGGGTAGCTTTGAGATTATTCACGTGCAAGATGCCGCTGGGCAGGAATTCGCGACCCGTCAGGGTAATGTGTTCACAATTGGAAAGGGCACAAAGCCATGGGTTTCCTTACCCAAGGGTAAGGGTGTCAAGTTGTCCATCATTGAAGAGGCCAGGAAACGCCATGCAGCTGGAACTGCTGCAGCATAA___ATTTTGTTCATTGGAAAACTCGATGGTTTTGATAGTCAGAATTTGTTAGCCTAGTAAATACTGTCATTATTAGAGAAGATTAGAAGGTTGGGAAAACTTGGTAGCTATCGTTGATTTATGGCTGGAAATCAATGTAGAAGCTAAGTCTAATCGGTCCAAATCTAGCACTAATATTAGAAGGTAGGCCTTGAATCATATCGGAAGTCCGGAGTGTTACTCTTGCCAGAGAATTTTAAAGTATAAAAAGTCTTTATAATTTAGGTCTTGAATGATATTGAAGTGCAAAGTGTTATTTTTACC

Fln Alignment:

sp_v1.1_unigene26283___MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSPGPHKGRECLPLVVLLRNRLKYALTYREVIAIVMQRLISVDGKVRTDKCYPAGFMDVL---KTNENFSL----------H*NKKEEAKYKLCKVRSVQFGDKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETGKIMEFIKFDVGNVIMXXXXXXXXXXXXIKHREKHKGSFEIIHVQDAAGQEFATRQGNVFTIGKGTKPWVSLPKGKGVKLSIIEEARKRH
A9NNW1_______________MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSPGPHKGRECLPLVVLIRNRLKYALTYREVIAIVMQRLISVDGKVRTDKCYPAGFMDVLSIAKTNENFRLLYDAKGRFRLHSIKDEEAKYKLCKVRSVQFGDKGIPYLNTYDGRTIRYPDPLVKANDTIKVDLETGKIKEFIKFDVGNVIMVTGGRNRGRVGVIKHREKHKGSFEIIHVQDAAGQEFATRQGNVFTIGKGTKPWVSLPKGKGVKLSIIEEARKRH

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
287			85	14	0.993533
308		85		14	0.993533
392	14		85		0.993533
396	85			14	0.993533
397	85	14			0.993533
399		14		85	0.993533
404	14			85	0.993533
405		85	14		0.993533
407		85	14		0.993533
411			14	85	0.993533
412	85		14		0.993533
440	66		33		0.997452
443	33		66		0.997452
449	66			33	0.997452
1113			19	80	1.0
1137		15	85		1.0
1201	18		81		1.0
1224	23			76	1.0
1233		55		44	1.0
1246		12		87	0.992554
1249	12			75	0.975346
1250	25			75	1.0
1251	14			85	0.993533
1274	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain