SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26281

Length: 1753 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26281

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleosome assembly protein family n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RDJ7_PHYPA	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	nucleosome assembly protein family	-	-	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSX5

Fln msg:

Fln protein: MDRKRAKIDEVDGLEDVDPQLVLSMERLQEAQDELDKANEEANDKVLEIEQTYMEKRRPIYQKRNEVIQKIPEFWLTAFLSHPHLSDLLTEDDQKAFKYLQSVNVEDLGDIKSGYKITFEFSPNPYFEDSKLCKVFRYVDDAAVTDVGNAPHWKDGMDLTKPKKDEKKGKKRSLKTDSFFNWFSEHVEEDLVVGMMQDEIAEIIKDDLWVNPLKYFNNENESDSEDDDDDDDGENKEGGEDDDDNDEDDDGDEDE*

Protein Length: 257

Fln nts: ATGGGGAATCACAAGTTGTGTGATGGAATTCTGAAATCCTCTTGATGGTATCCACTCCCCTCTTATCCCCTCCCACTCTCTGAACAATCAATCATATATATATTCCATGAGAAACAAAGCTGAACAATCATATTCCATGAAAAACAAAGGCAGCACACGCTTTCTAAAAGGGCGGAAAAATGTCCTAATAGCCTTCCCTTAAACCCTAAACCCTAACCCTTGCTCACCAACAGAAAAGCGGCCACGTCGTTTAAAAAACCATTTGAAGAAAACCATAAAACCCCCTTTAAAATTGACCCAAATATCGATTTATTTGGGATCGAGGGGGTAGGGATTCGCTCAACATCTCTCAAATATTTTGTCCATACTTTGGTTTCTTAGTTCAACATCTTCCTCTCCCTCTGCTACTGCTCCTCAATTCTCCATTCAGAAATCAGTGGAGGCGTCCTGCTATACTTATTTTCTACGGTTGGGCAATTTCCCTGTGTGGGTGTTGAGATAGGCGGCGTGAGA_-_ATGGACAGGAAGAGAGCAAAGATAGATGAAGTAGACGGACTTGAAGACGTGGACCCTCAACTTGTTTTGTCAATGGAGCGCTTGCAAGAGGCCCAGGACGAATTAGACAAGGCAAATGAAGAAGCAAATGACAAGGTGCTAGAGATCGAACAAACTTACATGGAGAAAAGGAGACCTATATATCAAAAGCGCAATGAAGTTATACAAAAGATTCCAGAATTTTGGCTTACAGCATTTTTGAGTCATCCACACTTGTCTGACCTTCTGACCGAGGATGATCAAAAGGCTTTCAAATATTTGCAGTCTGTGAATGTTGAAGATTTGGGCGACATAAAGTCAGGCTATAAGATTACTTTTGAGTTTTCACCAAACCCTTATTTTGAAGACAGTAAGCTATGTAAAGTGTTTAGGTATGTGGATGATGCTGCAGTTACAGATGTGGGCAATGCTCCCCATTGGAAAGATGGAATGGATTTGACAAAACCAAAGAAGGATGAGAAAAAAGGAAAGAAACGGTCATTAAAAACAGACAGTTTTTTTAACTGGTTCAGCGAACATGTTGAAGAAGATTTGGTTGTTGGAATGATGCAGGATGAGATAGCTGAGATCATCAAGGACGATCTTTGGGTTAATCCCTTGAAATATTTTAACAATGAAAATGAAAGTGACTCAGAGGATGATGACGATGACGATGATGGAGAAAATAAGGAAGGTGGTGAAGACGACGATGACAATGATGAAGATGATGATGGTGATGAAGACGAGTAA___TTAAAATTGAATTCTCAGATAATTACAATTCGACAAAATTTACAAATTTTGTTATTTTAGATTTTGGTTGCATACACAGATGAGGTCCTTAGAAATCAGGAAATTTTAGTCCCAAATTGTTACAAAAAATTTCTAGAAAGGCAGCTTCATGTCTTGCTCCTTTTACAAAACATTTTTAGCTGCAGGAATCTTCGAAAGAAGCCCCCTTGGAAAGGGTAGCATCGGTGCTTTTCTGGGCACTTTCTGTAAGTTGTGATTGCTCAATGTAGTTAAAAGAATTTACTTTTGTTTGTTTGGAATAATTTCAGCGTCTTTATTAAAAAAATAGTTTTCTCAGTGAAAATTAGAAATAGACATTGTTTCATGATCCTGCATGCTGCCTGTAACTCCGTCTATTACAATGTAAAACATGTAGAATTTTAGATGGTATTGCGGGGGGTATTTTACGTGGGTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene26281___MDRKRAKIDEVDGLEDVDPQLVLSMERLQEAQDELDKANEEANDKVLEIEQTYMEKRRPIYQKRNEVIQKIPEFWLTAFLSHPHLSDLLTEDDQKAFKYLQSVNVEDLGDIKSGYKITFEFSPNPYFEDSKLCKVFRYVDDAAVTDVGNAPHWKDGMDLTXXXXXXXXXXXXXXXTDSFFNWFSEHVEEDLVVGMMQDEIAEIIKDDLWVNPLKYF
C0PSX5_______________MDRKRAKIDEVEALEDVDPQLVLSMERLQEAQDELDKANEEANDKVLEIEQTYMEKRRPIYQRRNEVIQKIPEFWLTAFLSHPHLSDLLTEDDQKAFKYLQSVNVEDLGDIKSGYKITFEFVPNPYFEDSKLCKVFRYVDDAAVTDVGNAPHWKDGMDLTKPKKDEKKGKKRSSKTDSFFNWFSEHVEEDLVVGMMQDEIAEIIKDDLWVNPLKYF

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
126	75		25		0.996473
127	50		25	25	0.995533
128			50	50	1.0
129	25	50	25		0.995533
130	75			25	0.996473
132	75		25		0.996473
264		25		75	0.996473
338	10			90	0.90298
340		90	10		0.90298
1239		42		57	1.0
1261		11	88		0.923564
1264		11	88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain