SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26274

Length: 1355 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26274

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	strictosidine synthase, putative (EC:4.3.3.2)	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	strictosidine synthase family protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	72%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRD1

Fln msg: Separated hits, possible frame ERROR between 1180 and 1186, STOP codon was not found. Distance to subject end: 1 aas,

Fln protein: MSKGYDILSGRSVCAGIVFLGIAFFLGVDPLRRSVISGFPDFKAYSIEQPGAWSELQFGYDKQNRLQAAEVKFVNELAGPECLAFDLQGRGPYTGTGDGRIMRWNGPKIGWSEFAYTSPSRSLEICKPQNPPRANVEYEHICGRPLGLRFNKRTGYLYIADAYFGLLTVGPEGGLATPLTTEAGGVPLRFTNDLDIDDDDNVYFTDSSLKYQRRNFLQAVFSAETSGRVLKYNAKTKETQVLVEGLHFPNGLTLSKDRSFFIYASCAGRLRRYWVKGPKAGTTDSFAILPGYADNVRTNERGEFWVAMHFRRNALTHFLATHPRLRMMFLRLPxxxVGGTVHGIIAKYSADGELIDVLEDSQGKVVRAVSHVEEKDGTLWIGSVLMPYIATL

Protein Length: 393

Fln nts: ATGGGGATGATTGGCCTGTTACTGGTATTCACACGATCAGTCAAAGGCCCCAATTAGGATGCCTTTCGGTGTCACGCCATTGATGTTTTCTTGCAGTTTCTCCATATGTAACAGTCTCGCCATTGTTGAATAGACAGATCAGGGATAGCTGCCAGATTATCGTCAGAAAATAGCGATA_-_ATGTCAAAGGGATATGATATTCTCTCTGGAAGGAGTGTCTGTGCGGGGATTGTTTTCTTGGGCATAGCGTTTTTCTTGGGCGTAGATCCACTGCGTCGCAGCGTGATTTCTGGTTTTCCGGACTTCAAAGCGTATTCTATAGAGCAACCGGGCGCCTGGTCGGAGCTGCAGTTTGGATATGACAAGCAGAACAGATTGCAGGCGGCGGAGGTCAAGTTTGTGAACGAACTCGCTGGGCCTGAGTGCTTGGCCTTTGATCTTCAAGGGAGGGGTCCCTACACCGGGACCGGAGATGGCAGAATTATGCGCTGGAACGGCCCCAAGATTGGGTGGTCTGAATTCGCGTACACGTCGCCCAGCAGATCGCTGGAAATATGTAAACCTCAAAATCCTCCGAGGGCGAACGTGGAATACGAGCATATATGCGGTCGACCTCTGGGTTTGAGATTCAACAAACGGACTGGCTATCTATATATTGCAGACGCTTACTTCGGGCTCCTCACGGTTGGTCCCGAGGGTGGATTGGCTACTCCTCTCACCACTGAAGCAGGAGGAGTTCCTCTCAGATTCACCAACGATCTTGACATCGATGACGATGACAACGTTTATTTTACTGACAGCAGTCTCAAATATCAGAGAAGGAATTTCCTTCAAGCTGTTTTCTCGGCAGAGACATCCGGGCGTGTGTTAAAGTATAATGCTAAAACGAAAGAAACTCAGGTTCTGGTGGAAGGTCTCCATTTTCCAAACGGGCTGACTCTCAGCAAGGATCGCAGCTTTTTTATTTATGCATCCTGCGCGGGAAGGCTGAGACGATACTGGGTAAAAGGTCCAAAAGCAGGAACCACTGATTCCTTTGCCATTTTGCCAGGCTACGCGGACAACGTGAGGACAAATGAGAGAGGAGAATTTTGGGTGGCAATGCATTTCCGTCGGAATGCACTGACGCACTTCCTGGCAACGCACCCTCGCTTGAGAATGATGTTTCTCAGATTGCCCGTxxxxxxTGTTGGGGGAACAGTTCATGGCATCATAGCCAAGTACAGCGCCGACGGAGAGCTTATTGACGTGTTAGAGGATAGCCAGGGAAAGGTTGTGAGAGCAGTCAGCCACGTTGAGGAAAAGGATGGAACACTCTGGATTGGATCTGTTCTTATGCCTTACATTGCTACACTTAA

Fln Alignment:

sp_v1.1_unigene26274___GIVFLGIAFFLGVDPLRRSVISGFPDFKAYSIEQPGAWSELQFGYDKQNRLQAAEVKFVNELAGPECLAFDLQGRGPYTGTGDGRIMRWNGPKIGWSEFAYTSPSRSLEICKPQNPPRANVEYEHICGRPLGLRFNKRTGYLYIADAYFGLLTVGPEGGLATPLTTEAGGVPLRFTNXXXXXXXXNVYFTDSSLKYQRRNFLQAVFSAETSGRVLKYNAKTKETQVLVEGLHFPNGLTLSKDRSFFIYA-SCAGRLRRYWVKGPKAGTTDSFAILPGYADNVRTNERGEFWVAMHFRRNALTHFLATHPRLRMMFLRLPVxxVGGTVHGIIAKYSADGELIDVLEDSQGKVVRAVSHVEEKDGTLWIGSVLMPYIA
B8LRD1_______________GVALLGLAIYVSTDPFHLSPIARFPNFKSYAVDSP-PWSQLPLPKDDQNRLQKSEIKFLNQVQGPESIAFDPQGRGPYTGVADGRIMFWNGGQ--WSEFSFTSPNRSEELCKPGTNPMANIKYEHICGRPLGLRFNKGTGDLYIADAYFGLLVVGPQGGQATRLVSEVEGIPLKFTNDLDIDEQGIVYFTDSSVVYQRRNFIQLAFSAEPSGRVLKYNPQTKEASLLVGNIQLPNGLSLSKDGSFFVFSDTCVGRLKRHWLKGPKTGTTDVFAILPGHPDNVRTNEKGEFWVALHCRHNLYSHLLGMYPGVRKAILKLPIxxVGGRLHGSVVKYSPDGELIEILEDREGKVVRAVSEVEEKDGKLWMGSVLMPFVA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
130	75		25		0.996473
131			25	75	0.996473
132	75		25		0.996473
134	75		25		0.996473
135		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain