SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26264

Length: 1240 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene26264 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AT hook motif-containing protein	-	-	9.0e-13	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	protein	-	-	0.0	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AT hook, DNA-binding motif	IPR017956	-	0.0	58%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLB2

Fln msg: Distance to subject end: 65 aas, your sequence is shorter than subject: 239 - 305

Fln protein: MKDENQEAQTDSTGIPPKRKRGRPRKSHVSYPGEKAHAPQRLDGKKKPRRKKIDSSMPSFPDNTLVGQSVHGVLDGSFDAGYLLMVRVGDTDTVLRGVVFDPGLSVPISKTNDIAPNVNLTRRDENIPLPPELPPSIHNTVAMPSTPVSLLPAMVPIVNSQGTTSVPIPDQTTCPVQVGSNQTRVALGQPNGSLPKSVHDHSSQINKEAAPKPGESFSYLQQPNPIPTGPVSRLQQPTP

Protein Length: 240

Fln nts: CGTCGTGACCTTGGTTATCACTCAAACTCTCTACAATGGGGGCATACAACGGTGGGTTTAAAAACTGCTGGTTTCGGGCAGCGCTGCTTCTCGTTGTTTGTATAGCAGGCGACGCAAAACACCCGAGATCGACCCACGCCGGCTTCGCAGGGAAGCATTTTGACCCCGATTCTCACTATTTACTGTCATCTTCTTCAACGGTCTTTTACATTTTCCTCTCTTGCTCATGCAGACCCTCCAAAACAGTGGTCAAGTTCGAAAATATAAGGGTTGCTGTGTTTAAGCGAGATTGGATTTTCATATATGGAGTTTTGCTTGTGGCAGCTCCGTGTATACTGATATATCTCCTTCAAGGATCGTGGATGGACTGTTTAACATGCACGTGGGCTTCAAAACATCCAAATTAACCCCCCTGCGGATGCTTCAACAAGTCGGGTAATGCAGAGCTTCAGTTTGAAGATTCAAGGCATCTTTTTGCTCAAAGTTCTACCATTTTCAGACTAGACGTTGAGGTGTTTAAA_-_ATGAAAGACGAAAATCAAGAAGCTCAGACTGATTCTACAGGTATACCTCCAAAACGGAAGCGAGGACGCCCCCGTAAATCACATGTTTCGTATCCAGGTGAGAAGGCTCATGCACCACAACGGTTGGATGGGAAAAAGAAACCAAGACGCAAGAAAATAGATTCGTCAATGCCTTCATTTCCTGACAATACTTTGGTAGGCCAATCAGTTCATGGTGTATTGGATGGTTCATTTGATGCTGGCTACTTGCTGATGGTTAGAGTGGGAGACACTGATACAGTCCTGCGAGGTGTTGTCTTTGATCCGGGATTGTCGGTGCCTATTTCTAAAACAAACGATATTGCACCAAATGTCAATCTGACAAGGAGGGATGAGAATATTCCTCTACCCCCTGAACTTCCTCCATCTATTCACAATACTGTGGCCATGCCATCAACTCCTGTTTCTTTATTGCCAGCTATGGTGCCTATTGTGAATAGTCAGGGTACAACATCAGTTCCTATACCAGATCAAACTACATGTCCAGTGCAGGTTGGTTCAAATCAAACAAGAGTTGCTTTGGGTCAACCAAATGGGAGCTTACCAAAGTCTGTACATGATCATTCTAGCCAGATCAACAAAGAGGCTGCCCCTAAGCCCGGAGAATCTTTCTCATACTTGCAGCAGCCAAACCCCATTCCCACTGGACCTGTCTCTCGTCTGCAGCAACCGACCCCCCC

Fln Alignment:

sp_v1.1_unigene26264___MKDENQEAQTDSTGIXXXXXXXXXXKSHVSYPGEKAHAPQRLDGKKKPRRKKIDSSMPSFPDNTLVGQSVHGVLDGSFDAGYLLMVRVGDTDTVLRGVVFDPGLSVPISKTNDIAPNVNLTRRDENIPLPPELPPSIHNTVAMPSTPVSLLPAMVPIVNSQGTTSVPIPDQTTCPVQVGSNQTRVALGQPNGSLPKSVHDHSSQINKEAAPKPGESFSYLQQPNPIPTGPVSRLQQPTP
B8LLB2_______________MKDENQEAQTDSTDIPPKRKRGRPRKQHLLYPGEKAHVPQRLDGKKKPRRKKIDSSMPSFPDNTFVGQSVHGVLDGSFDAGYLLMVRVGDTDTVLRGVVFDPGMSVPISKANDIAPNVNLTRRDENILLSPELPPSIQNTVAMPSTPIPLLPTMVPVVNSQGTTSVPIPDQTARPVQVGSNQTRVVLGQPNGSLPKSVPDHSSQINKEPAPKPGESFSYLQQPNPIPTGAVSRQQQPIP

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
769		90		10	0.90298
770	90		10		0.90298
772	90	10			0.90298
774	90		10		0.90298
775		10	90		0.90298
1039	77	5	16		1.0
1041	77	5	16		1.0
1042	83			16	1.0
1046	17	82			1.0
1049		17		82	1.0
1050		17	82		1.0
1054	82		17		1.0
1055	82			17	1.0
1056		17	82		1.0
1058		17		82	1.0
1142	11			88	0.923564
1180	85	14			0.993533
1181		14	85		0.993533
1182		16		83	0.994512
1183		16		83	0.994512
1184	16			83	0.994512
1206		66	33		0.997452
1209	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain