SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26249

Length: 1392 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene26249 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG1272 Predicted membrane protein, hemolysin III homolog	-	-	2.0e-19	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	protein	-	-	0.0	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to hormone stimulus	GO:0009725	Biological Process	0.0	65%
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Hly-III-related	IPR004254	-	0.0	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NP50

Fln msg: Distance to subject end: 51 aas, your sequence is shorter than subject: 305 - 355

Fln protein: MGVRVMARRTNLAGEEAKADCMTVENTDKMATAKWMWKKVKQEYRLVHFDALPDYLKDNEYILNYYRAEWPLKQALWSIFSWHNETLNVWTHLAGFLLFLALTISSALELMGITEFSSLFPSSLQETLQGANASEHYTLMGLVKHDIQKMMQPNLPKRATRWPFFVFLGGSMFCLFTSSFSHLLSCHSKRLNLFLWRLDYTGISVMIATSFFPPIYYVFQCTPIWQFIYLTSISTMGVFTVLVLMIPSFSSAKFRSFRALLFLAMGFSGVIPAIHAIASNWHEPHCFVTMAYELAMAFFYALGTF

Protein Length: 306

Fln nts: CGTGTTCCAGTTAACTATCTAATTATGTTGCTTGGCCCGGCATTTTAAACGATGGACAGTGCGTGCAAGAAACCAAGAAGGTTGTTCAACGAAGCAGCAGAACTGGTGAAGAAAAAGGCGAGAAAACTGTGATGAGTGGGGGGTGATTTTGGTGGAAAAGCAGCTTTGTCGGAGGCCAGAAATGACCGGAACTTGATGGGAAAAGGAGAAAGGTAGATGATTTCTGCTGATTTGAATGAGGAAGGGAATTGGGACTGTGGAAATGTGAATTAGGTGCAGAGCATTTTCCATTGGAGAATTGAATGTTCGACGATTCCTGTAGGTTTGGGGAGAATCGGGTTGATGAACAAGGTTTTTAATGCATCAAAATTATTTTAGTTATTGAGCATTTTCTGGGTGGTTGGGATTGAGCATTGCTGGATAATATTATTATTTAGGAGCATAATACAGGGGAAGAATTGAGTAGTTTTCTGAT_-_ATGGGGGTCAGGGTGATGGCAAGGAGGACTAATTTGGCTGGTGAAGAGGCCAAGGCTGATTGTATGACAGTTGAGAATACTGATAAAATGGCTACAGCCAAATGGATGTGGAAGAAAGTGAAGCAAGAGTACCGTTTGGTTCACTTTGATGCACTGCCAGATTACTTGAAGGACAACGAATATATTTTGAACTATTACAGGGCGGAGTGGCCATTGAAGCAGGCTCTGTGGAGCATTTTCTCATGGCACAACGAGACCCTCAACGTTTGGACGCATTTGGCAGGGTTCCTCCTTTTCTTAGCTTTGACCATTTCAAGTGCATTGGAGTTAATGGGAATTACAGAATTTTCTTCGCTTTTCCCCAGTTCCTTGCAGGAAACTTTACAGGGAGCCAATGCCTCAGAGCACTATACGCTGATGGGTCTTGTGAAGCATGATATACAAAAGATGATGCAACCCAATTTGCCCAAGCGAGCAACTAGATGGCCATTTTTTGTGTTTCTAGGAGGCTCAATGTTTTGCCTCTTTACAAGCAGCTTTAGTCATCTACTCAGCTGCCACTCTAAGCGACTCAACTTATTCCTCTGGCGGCTTGATTATACTGGTATTTCTGTCATGATTGCAACATCATTCTTTCCCCCTATATACTATGTGTTTCAGTGCACTCCAATATGGCAATTTATATACTTAACAAGCATATCCACCATGGGAGTTTTCACGGTCCTAGTGTTAATGATTCCTTCTTTCTCAAGTGCAAAGTTCCGGTCCTTTCGAGCATTGCTTTTCCTGGCCATGGGTTTTTCAGGTGTAATTCCTGCTATTCATGCAATTGCCTCAAATTGGCATGAGCCTCATTGCTTTGTTACCATGGCCTATGAGCTTGCTATGGCATTTTTCTATGCTCTGGGGACTTTCTT

Fln Alignment:

sp_v1.1_unigene26249___KQEYRLVHFDALPDYLKDNEYILNYYRAEWPLKQALWSIFSWHNETLNVWTHLAGFLLFLALTISSALELMGIT--------------------------------EFSSLFPSSLQETLQG----ANASEHYTLMGLVKHDIQKMMQPNLPKRATRWPFFVFLGGSMFCLFTSSFSHLLSCHSKRLNLFLWRLDYTGISVMIATSFFPPIYYVFQCTPIWQFIYLTSISTMGVFTVLVLMIPXXXXXXXXXXXALLFLAMGFSGVIPAIHAIASNWHEPHCFVTMAYELAMAFFYALG
A9NP50_______________KDERRMVDFSALPDYMRDNEYILRHYRAECPLKHTLLSIFTIHNETLNVWTHLAGFVLFLCLTIYTATKLPNVADLPVPNKANLYRLQNEIRAWPMYLPNMAELQAELRTSLPNWVGNCIPGNFSYSNQTEHCILQ-TIKEDVTNMVFPHSQRPITRWPFLVFLGAATYCLFASATFHLLSCHSKRLYYIMLRLDYSGIVALIAASFYPPVYYSFMCAPFFRKLYLTAITLLGIATVFVSLLPAFQNPEFRTLRATLFSGMGVWGVAPVVHKLILHKGEPEALHTAAYEIGMGCFYVLG

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
267	66	33			0.997452
626			90	10	0.90298
634		90	10		0.90298
635	10	90			0.90298
637			10	90	0.90298
651	11	88			0.923564
652	88	11			0.923564
653	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain