SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26220

Length: 528 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene26220
AATGCTTTGAAGTATTGCGATCGCGAGGCTACAGAATTGCAGTTACACATGTTGGAAGTGACACAGTTTCTGTTCATGATATGGATTGGACATTACCAACAGCAATTGTCTTAGGAAACGAACACAGGGGCATAACTGGAGAAGCGTTAGAATTTTCAGATATAAAGTGCAGCATTCCAATGACAGGCATGGTTGATTCTTTCAATGTTTCAGTTGCTGCTGGCATCTTTATGCACACTGCAGTTCACGACAGGATATCTTGCATGGGTTCACATGGTGACTTGAGACCAAAAGAACGCCAAATCTTAGCTGCAGAGTTCTATTTACGTCACAAGAAGAATGTGCCCAATATCATGGATCGCATTGTTTATAATGGAATGCTCAGGCATATTTGTCTTTAAATTAAACATGGGAGAGCTGCTTGGAATGTAATCTATAGCATTCTTATCCGAGAGCACAATTAGTTTTTTATTGGGTCCTCAATATCTTGATTTGGAAAATATGATTTATATACCACGAGTTATTGCT

Ace file of the UniGene sp_v1.1_unigene26220

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	rRNA methylase, putative (EC:2.1.1.34)	-	-	2.0e-40	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	trna rrna methyltransferase family protein	-	-	0.0	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	tRNA/rRNA methyltransferase, SpoU	IPR001537	-	0.0	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD60

Fln msg: your sequence is shorter than subject: 133 - 327

Fln protein: CFEVLRSRGYRIAVTHVGSDTVSVHDMDWTLPTAIVLGNEHRGITGEALEFSDIKCSIPMTGMVDSFNVSVAAGIFMHTAVHDRISCMGSHGDLRPKERQILAAEFYLRHKKNVPNIMDRIVYNGMLRHICL*

Protein Length: 134

Fln nts: AATGCTTTGAAGTATTGCGATCGCGAGGCTACAGAATTGCAGTTACACATGTTGGAAGTGACACAGTTTCTGTTCATGATATGGATTGGACATTACCAACAGCAATTGTCTTAGGAAACGAACACAGGGGCATAACTGGAGAAGCGTTAGAATTTTCAGATATAAAGTGCAGCATTCCAATGACAGGCATGGTTGATTCTTTCAATGTTTCAGTTGCTGCTGGCATCTTTATGCACACTGCAGTTCACGACAGGATATCTTGCATGGGTTCACATGGTGACTTGAGACCAAAAGAACGCCAAATCTTAGCTGCAGAGTTCTATTTACGTCACAAGAAGAATGTGCCCAATATCATGGATCGCATTGTTTATAATGGAATGCTCAGGCATATTTGTCTTTAA___ATTAAACATGGGAGAGCTGCTTGGAATGTAATCTATAGCATTCTTATCCGAGAGCACAATTAGTTTTTTATTGGGTCCTCAATATCTTGATTTGGAAAATATGATTTATATACCACGAGTTATTGCT

Fln Alignment:

sp_v1.1_unigene26220___CFEVLRSRGYRIAVTHVGSDTVSVHDMDWTLPTAIVLGNEHRGITGEALEFSDIKCSIPMTGMVDSFNVSVAAGIFMHTAVHDRISCMGSHGDLRPKERQILAAEFYLRHKKNVPNIMDRIVYNGMLRHICL
D5AD60_______________CFEVLRSRGYRIAVTHVGNDTVSVHDMDWTLPTAIVLGNEHRGISGEALKFSDIKCSIPMTGMVDSFNVSVAAGIFMHAAVHDRISRMGSHGDLRPKECQILAAEFYLRHKKNVTSIMDRIVDNGSLRDIYL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
118		33		66	0.997452
289		75	25		0.996473
290			25	75	0.996473
291			25	75	0.996473
306	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain